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annotate scripts/installer/glassfish-setup.sh @ 14:be7787c36e58 default tip

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new: nofity LGSercies for deleted files
author Zoe Hong <zhong@mpiwg-berlin.mpg.de>
date Mon, 02 Nov 2015 16:41:23 +0100
parents a50cf11e5178
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
10
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
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1 #!/bin/bash
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2 # YOU (THE HUMAN USER) SHOULD NEVER RUN THIS SCRIPT DIRECTLY!
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3 # It should be run by higher-level installers.
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4 # The following arguments should be passed to it
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5 # as environmental variables:
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6 # (no defaults for these values are provided here!)
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7 #
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8 # glassfish configuration:
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9 # GLASSFISH_ROOT
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10 # GLASSFISH_DOMAIN
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11 # ASADMIN_OPTS
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12 # MEM_HEAP_SIZE
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13 #
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14 # database configuration:
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15 # DB_PORT
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16 # DB_HOST
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17 # DB_NAME
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18 # DB_USER
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19 # DB_PASS
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20 #
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21 # Rserve configuration:
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22 # RSERVE_HOST
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23 # RSERVE_PORT
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24 # RSERVE_USER
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25 # RSERVE_PASS
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26 #
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27 # other local configuration:
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28 # HOST_ADDRESS
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29 # SMTP_SERVER
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30 # FILES_DIR
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31
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32 # The script is going to fail and exit if any of the
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33 # parameters aren't supplied. It is the job of the
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34 # parent script to set all these env. variables,
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35 # providing default values, if none are supplied by
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36 # the user, etc.
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37
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38 if [ -z "$DB_NAME" ]
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39 then
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40 echo "You must specify database name (DB_NAME)."
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41 echo "PLEASE NOTE THAT YOU (THE HUMAN USER) SHOULD NEVER RUN THIS SCRIPT DIRECTLY!"
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42 echo "IT SHOULD ONLY BE RUN BY OTHER SCRIPTS."
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43 exit 1
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44 fi
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45
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
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46 if [ -z "$DB_PORT" ]
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47 then
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48 echo "You must specify database port (DB_PORT)."
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49 exit 1
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50 fi
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51
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52 if [ -z "$DB_HOST" ]
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53 then
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54 echo "You must specify database host (DB_HOST)."
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55 exit 1
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56 fi
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57
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58 if [ -z "$DB_USER" ]
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59 then
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60 echo "You must specify database user (DB_USER)."
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61 exit 1
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62 fi
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63
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64 if [ -z "$DB_PASS" ]
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65 then
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66 echo "You must specify database password (DB_PASS)."
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67 exit 1
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68 fi
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69
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70 if [ -z "$RSERVE_HOST" ]
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71 then
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72 echo "You must specify Rserve host (RSERVE_HOST)."
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73 exit 1
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74 fi
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75
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76 if [ -z "$RSERVE_PORT" ]
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77 then
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78 echo "You must specify Rserve port (RSERVE_PORT)."
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79 exit 1
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80 fi
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81
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82 if [ -z "$RSERVE_USER" ]
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83 then
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84 echo "You must specify Rserve user (RSERVE_USER)."
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85 exit 1
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86 fi
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87
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88 if [ -z "$RSERVE_PASS" ]
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89 then
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90 echo "You must specify Rserve password (RSERVE_PASS)."
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91 exit 1
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92 fi
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93
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94 if [ -z "$SMTP_SERVER" ]
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95 then
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96 echo "You must specify smtp server (SMTP_SERVER)."
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97 exit 1
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98 fi
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99
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100 if [ -z "$HOST_ADDRESS" ]
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101 then
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102 echo "You must specify host address (HOST_ADDRESS)."
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103 exit 1
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104 fi
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105
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106 if [ -z "$FILES_DIR" ]
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107 then
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108 echo "You must specify files directory (FILES_DIR)."
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109 exit 1
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110 fi
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111
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112 if [ -z "$MEM_HEAP_SIZE" ]
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113 then
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114 echo "You must specify the memory heap size for glassfish (MEM_HEAP_SIZE)."
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115 exit 1
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116 fi
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117
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118 if [ -z "$GLASSFISH_DOMAIN" ]
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119 then
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120 echo "You must specify glassfish domain (GLASSFISH_DOMAIN)."
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121 exit 1
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122 fi
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123
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124 echo "checking glassfish root:"${GLASSFISH_ROOT}
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125
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126 if [ ! -d "$GLASSFISH_ROOT" ]
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127 then
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128 echo Glassfish root '$GLASSFISH_ROOT' does not exist
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129 exit 1
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130 fi
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131 GLASSFISH_BIN_DIR=$GLASSFISH_ROOT/bin
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132
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133 echo "checking glassfish domain:"${GLASSFISH_ROOT}/glassfish/domains/$GLASSFISH_DOMAIN
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134
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135 DOMAIN_DIR=$GLASSFISH_ROOT/glassfish/domains/$GLASSFISH_DOMAIN
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136 if [ ! -d "$DOMAIN_DIR" ]
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diff changeset
137 then
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138 echo Domain directory '$DOMAIN_DIR' does not exist
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139 exit 2
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parents:
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140 fi
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diff changeset
141
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142 echo "Setting up your glassfish4 to support Dataverse"
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143 echo "Glassfish directory: "$GLASSFISH_ROOT
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144 echo "Domain directory: "$DOMAIN_DIR
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145
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146 # Move to the glassfish dir
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147 pushd $GLASSFISH_BIN_DIR
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148
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149 ###
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150 # take the domain up, if needed.
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151 DOMAIN_DOWN=$(./asadmin list-domains | grep "$DOMAIN " | grep "not running")
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152 if [ $(echo $DOMAIN_DOWN|wc -c) -ne 1 ];
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153 then
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154 echo Trying to start domain $GLASSFISH_DOMAIN up...
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155 ./asadmin $ASADMIN_OPTS start-domain $GLASSFISH_DOMAIN
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156 else
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157 echo domain running
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diff changeset
158 fi
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159
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160 # undeploy the app, if running:
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161
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162 ./asadmin $ASADMIN_OPTS undeploy dataverse-4.0
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163
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164 # avoid OutOfMemoryError: PermGen per http://eugenedvorkin.com/java-lang-outofmemoryerror-permgen-space-error-during-deployment-to-glassfish/
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165 #./asadmin $ASADMIN_OPTS list-jvm-options
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166 ./asadmin $ASADMIN_OPTS delete-jvm-options "-XX\:MaxPermSize=192m"
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167 ./asadmin $ASADMIN_OPTS create-jvm-options "-XX\:MaxPermSize=512m"
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168 ./asadmin $ASADMIN_OPTS create-jvm-options "-XX\:PermSize=256m"
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169 ./asadmin $ASADMIN_OPTS delete-jvm-options -Xmx512m
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170 ./asadmin $ASADMIN_OPTS create-jvm-options "-Xmx${MEM_HEAP_SIZE}m"
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diff changeset
171
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172 ###
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diff changeset
173 # JDBC connection pool
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174
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175 # we'll try to delete a pool with this name, if already exists.
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176 # - in case the database name has changed since the last time it
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177 # was configured.
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178 ./asadmin $ASADMIN_OPTS delete-jdbc-connection-pool --cascade=true dvnDbPool
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parents:
diff changeset
179
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parents:
diff changeset
180
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diff changeset
181 ./asadmin $ASADMIN_OPTS create-jdbc-connection-pool --restype javax.sql.DataSource \
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182 --datasourceclassname org.postgresql.ds.PGPoolingDataSource \
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183 --property create=true:User=$DB_USER:PortNumber=$DB_PORT:databaseName=$DB_NAME:password=$DB_PASS:ServerName=$DB_HOST \
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diff changeset
184 dvnDbPool
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parents:
diff changeset
185
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parents:
diff changeset
186 ###
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diff changeset
187 # Create data sources
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188 ./asadmin $ASADMIN_OPTS create-jdbc-resource --connectionpoolid dvnDbPool jdbc/VDCNetDS
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parents:
diff changeset
189
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parents:
diff changeset
190 ###
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parents:
diff changeset
191 # Set up the data source for the timers
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192 ./asadmin $ASADMIN_OPTS set configs.config.server-config.ejb-container.ejb-timer-service.timer-datasource=jdbc/VDCNetDS
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parents:
diff changeset
193
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parents:
diff changeset
194 ###
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195 # Add the necessary JVM options:
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196 #
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197 # location of the datafiles directory:
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198 # (defaults to dataverse/files in the users home directory)
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199 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddataverse.files.directory=${FILES_DIR}"
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200 # Rserve-related JVM options:
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201 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddataverse.rserve.host=${RSERVE_HOST}"
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202 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddataverse.rserve.port=${RSERVE_PORT}"
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203 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddataverse.rserve.user=${RSERVE_USER}"
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diff changeset
204 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddataverse.rserve.password=${RSERVE_PASS}"
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diff changeset
205 # Data Deposit API options
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diff changeset
206 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddataverse.fqdn=${HOST_ADDRESS}"
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diff changeset
207 # password reset token timeout in minutes
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diff changeset
208 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddataverse.auth.password-reset-timeout-in-minutes=60"
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parents:
diff changeset
209
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diff changeset
210 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Djavax.xml.parsers.SAXParserFactory=com.sun.org.apache.xerces.internal.jaxp.SAXParserFactoryImpl"
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parents:
diff changeset
211
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parents:
diff changeset
212 # EZID DOI Settings
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diff changeset
213 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddoi.password=apitest"
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parents:
diff changeset
214 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddoi.username=apitest"
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parents:
diff changeset
215 ./asadmin $ASADMIN_OPTS create-jvm-options "\-Ddoi.baseurlstring=https\://ezid.cdlib.org"
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parents:
diff changeset
216
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parents:
diff changeset
217 # enable comet support
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parents:
diff changeset
218 ./asadmin $ASADMIN_OPTS set server-config.network-config.protocols.protocol.http-listener-1.http.comet-support-enabled="true"
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parents:
diff changeset
219
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diff changeset
220 ./asadmin $ASADMIN_OPTS delete-connector-connection-pool --cascade=true jms/__defaultConnectionFactory-Connection-Pool
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parents:
diff changeset
221
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diff changeset
222 # no need to explicitly delete the connector resource for the connection pool deleted in the step
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parents:
diff changeset
223 # above - the cascade delete takes care of it.
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parents:
diff changeset
224 #./asadmin $ASADMIN_OPTS delete-connector-resource jms/__defaultConnectionFactory-Connection-Pool
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parents:
diff changeset
225
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parents:
diff changeset
226 # http://docs.oracle.com/cd/E19798-01/821-1751/gioce/index.html
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parents:
diff changeset
227 ./asadmin $ASADMIN_OPTS create-connector-connection-pool --steadypoolsize 1 --maxpoolsize 250 --poolresize 2 --maxwait 60000 --raname jmsra --connectiondefinition javax.jms.QueueConnectionFactory jms/IngestQueueConnectionFactoryPool
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parents:
diff changeset
228
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parents:
diff changeset
229 # http://docs.oracle.com/cd/E18930_01/html/821-2416/abllx.html#giogt
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parents:
diff changeset
230 ./asadmin $ASADMIN_OPTS create-connector-resource --poolname jms/IngestQueueConnectionFactoryPool --description "ingest connector resource" jms/IngestQueueConnectionFactory
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
231
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parents:
diff changeset
232 # http://docs.oracle.com/cd/E18930_01/html/821-2416/ablmc.html#giolr
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parents:
diff changeset
233 ./asadmin $ASADMIN_OPTS create-admin-object --restype javax.jms.Queue --raname jmsra --description "sample administered object" --property Name=DataverseIngest jms/DataverseIngest
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parents:
diff changeset
234
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235 # no need to explicitly create the resource reference for the connection factory created above -
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parents:
diff changeset
236 # the "create-connector-resource" creates the reference automatically.
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diff changeset
237 #./asadmin $ASADMIN_OPTS create-resource-ref --target Cluster1 jms/IngestQueueConnectionFactory
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parents:
diff changeset
238
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parents:
diff changeset
239 # created mail configuration:
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parents:
diff changeset
240
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parents:
diff changeset
241 ./asadmin $ASADMIN_OPTS create-javamail-resource --mailhost "$SMTP_SERVER" --mailuser "dataversenotify" --fromaddress "do-not-reply@${HOST_ADDRESS}" mail/notifyMailSession
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parents:
diff changeset
242
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parents:
diff changeset
243 # so we can front with apache httpd ( ProxyPass / ajp://localhost:8009/ )
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parents:
diff changeset
244 ./asadmin $ASADMIN_OPTS create-network-listener --protocol http-listener-1 --listenerport 8009 --jkenabled true jk-connector
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parents:
diff changeset
245
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parents:
diff changeset
246 ###
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parents:
diff changeset
247 # Restart
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parents:
diff changeset
248 echo Updates done. Restarting...
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249 ./asadmin $ASADMIN_OPTS restart-domain $GLASSFISH_DOMAIN
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parents:
diff changeset
250
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
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parents:
diff changeset
251 ###
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parents:
diff changeset
252 # Clean up
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parents:
diff changeset
253 popd
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parents:
diff changeset
254
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
255 echo "Glassfish setup complete"
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
256 date
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
257