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new: nofity LGSercies for deleted files
author Zoe Hong <zhong@mpiwg-berlin.mpg.de>
date Mon, 02 Nov 2015 16:41:23 +0100
parents a50cf11e5178
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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10
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1 #!/bin/bash
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2 # STOP!
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3 # DO NOT ADD MORE ASADMIN COMMANDS TO THIS SCRIPT!
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4 # IF YOU NEED TO ADD MORE GLASSFISH CONFIG SETTINGS, ADD THEM
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5 # TO THE ../installer/glassfish-setup.sh SCRIPT.
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6 # I'M ASSUMING THAT WE'LL WANT TO CONTINUE MAINTAINING THIS SCRIPT,
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7 # (FOR VAGRANT SETUPS, etc.?); IT SHOULD STILL BE WORKING, BY
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8 # CALLING THE NEW SCRIPT ABOVE - SO NO NEED TO DUPLICATE THE ASADMIN
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9 # COMMANDS HERE.
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10 # FROM NOW ON, ONLY NON-ASADMIN CONFIGURATION SHOULD GO INTO THIS
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11 # SCRIPT. (which makes the name especially misleading - but I didn't
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12 # want to change it, in case other scripts are calling it by name!)
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13 # -Leonid 4.0 beta
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14
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15 # This is a setup script for setting up Glassfish 4 to run Dataverse
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16 # The script was tested on Mac OS X.9
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17 # ASSUMPTIONS
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18 # * Script has to run locally (i.e. on the machine that hosts the server)
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19 # * Internet connectivity is assumed, in order to get the postgresql driver.
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20
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21 ##
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22 # Default values - Change to suit your machine.
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23 DEFAULT_GLASSFISH_ROOT=/Applications/NetBeans/glassfish-4.0
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24 DEFAULT_DOMAIN=domain1
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25 DEFAULT_ASADMIN_OPTS=" "
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26
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27 ###
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28 # Database values. Update as needed.
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29 # Note: DB_USER "dvnApp" is case-sensitive and later used in "scripts/database/reference_data.sql"
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30 #
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31 DB_PORT=5432; export DB_PORT
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32 DB_HOST=localhost; export DB_HOST
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33 DB_NAME=dvndb; export DB_NAME
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34 DB_USER=dvnApp; export DB_USER
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35 DB_PASS=dvnAppPass; export DB_PASS
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36
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37 ###
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38 # Rserve configuration:
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39 RSERVE_HOST=localhost; export RSERVE_HOST
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40 RSERVE_PORT=6311; export RSERVE_PORT
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41 RSERVE_USER=rserve; export RSERVE_USER
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42 RSERVE_PASS=rserve; export RSERVE_PASS
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43
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44 ###
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45 # Other configuration values:
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46 MEM_HEAP_SIZE=1024; export MEM_HEAP_SIZE
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47 HOST_ADDRESS=localhost; export HOST_ADDRESS
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48 SMTP_SERVER=mail.hmdc.harvard.edu; export SMTP_SERVER
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49 FILES_DIR=${HOME}/dataverse/files; export FILES_DIR
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50
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51 ### End of default configuration values.
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52
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53 # "${VAR+xxx}" for unset vs. empty per http://stackoverflow.com/questions/228544/how-to-tell-if-a-string-is-not-defined-in-a-bash-shell-script/230593#230593
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54
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55 if [ "${DB_NAME_CUSTOM+xxx}" ]
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56 then
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57 echo "Default DB_NAME ($DB_NAME) overridden: $DB_NAME_CUSTOM"
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58 DB_NAME=$DB_NAME_CUSTOM
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59 fi
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60
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61 if [ "${DB_USER_CUSTOM+xxx}" ]
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62 then
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63 echo "Default DB_USER ($DB_USER) overridden: $DB_USER_CUSTOM"
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64 DB_USER=$DB_USER_CUSTOM
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65 fi
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66
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67 if [ "${DB_PASS_CUSTOM+xxx}" ]
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68 then
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69 echo "Default DB_PASS ($DB_PASS) overridden: $DB_PASS_CUSTOM"
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70 DB_PASS=$DB_PASS_CUSTOM
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71 fi
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72
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73 #echo "end"
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74 #exit
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75
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76 ##
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77 # External dependencies
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78 PGSQL_DRIVER_URL=http://jdbc.postgresql.org/download/postgresql-9.3-1100.jdbc41.jar
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79
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80 if [ "$SUDO_USER" = "vagrant" ]
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81 then
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82 echo "We are running in a Vagrant environment."
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83 cat /etc/redhat-release
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84 # Choosing all lower case indentifiers for DB_NAME and DB_USER for this reason:
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85 #
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86 # Quoting an identifier also makes it case-sensitive, whereas unquoted names
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87 # are always folded to lower case. For example, the identifiers FOO, foo, and
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88 # "foo" are considered the same by PostgreSQL, but "Foo" and "FOO" are
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89 # different from these three and each other. (The folding of unquoted names
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90 # to lower case in PostgreSQL is incompatible with the SQL standard, which
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91 # says that unquoted names should be folded to upper case. Thus, foo should
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92 # be equivalent to "FOO" not "foo" according to the standard. If you want to
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93 # write portable applications you are advised to always quote a particular
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94 # name or never quote it.) --
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95 # http://www.postgresql.org/docs/9.3/static/sql-syntax-lexical.html
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96 DB_NAME=dataverse_db
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97 DB_USER=dataverse_app
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98 DB_PASS=secret
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99 echo "Configuring EPEL Maven repo "
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100 cd /etc/yum.repos.d
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101 wget http://repos.fedorapeople.org/repos/dchen/apache-maven/epel-apache-maven.repo
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102 cd
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103 echo "Installing dependencies via yum"
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104 yum install -y -q java-1.7.0-openjdk-devel postgresql-server apache-maven httpd mod_ssl
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105 rpm -q postgresql-server
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106 echo "Starting PostgreSQL"
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107 chkconfig postgresql on
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108 /sbin/service postgresql initdb
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109 cp -a /var/lib/pgsql/data/pg_hba.conf /var/lib/pgsql/data/pg_hba.conf.orig
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110 sed -i -e 's/ident$/trust/' /var/lib/pgsql/data/pg_hba.conf
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111 /sbin/service postgresql start
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112 POSTGRES_USER=postgres
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113 echo "Creating database user $DB_USER"
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114 su $POSTGRES_USER -s /bin/sh -c "psql -c \"CREATE ROLE \"$DB_USER\" UNENCRYPTED PASSWORD '$DB_PASS' NOSUPERUSER CREATEDB CREATEROLE NOINHERIT LOGIN\""
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115 #su $POSTGRES_USER -s /bin/sh -c "psql -c '\du'"
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116 echo "Creating database $DB_NAME"
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117 su $POSTGRES_USER -s /bin/sh -c "psql -c 'CREATE DATABASE \"$DB_NAME\" WITH OWNER = \"$DB_USER\"'"
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118 GLASSFISH_USER=glassfish
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119 echo "Ensuring Unix user '$GLASSFISH_USER' exists"
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120 useradd $GLASSFISH_USER || :
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121 GLASSFISH_ZIP=`ls /downloads/glassfish*zip`
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
122 GLASSFISH_USER_HOME=~glassfish
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
123 echo "Copying $GLASSFISH_ZIP to $GLASSFISH_USER_HOME and unzipping"
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
124 su $GLASSFISH_USER -s /bin/sh -c "cp $GLASSFISH_ZIP $GLASSFISH_USER_HOME"
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
125 su $GLASSFISH_USER -s /bin/sh -c "cd $GLASSFISH_USER_HOME && unzip -q $GLASSFISH_ZIP"
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
126 DEFAULT_GLASSFISH_ROOT=$GLASSFISH_USER_HOME/glassfish4
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
127 su $GLASSFISH_USER -s /bin/sh -c "/scripts/installer/glassfish-setup.sh"
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
128 fi
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
129
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
130
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
131 # Set the scripts parameters (if needed)
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
132 if [ -z "${GLASSFISH_ROOT+xxx}" ]
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
133 then
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
134 echo setting GLASSFISH_ROOT to $DEFAULT_GLASSFISH_ROOT
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
135 GLASSFISH_ROOT=$DEFAULT_GLASSFISH_ROOT; export GLASSFISH_ROOT
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
136 fi
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
137 if [ ! -d "$GLASSFISH_ROOT" ]
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
138 then
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
139 echo Glassfish root '$GLASSFISH_ROOT' does not exist
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
140 exit 1
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
141 fi
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
142 GLASSFISH_BIN_DIR=$GLASSFISH_ROOT/bin
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
143
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
144 if [ -z "${DOMAIN+xxx}" ]
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
145 then
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
146 echo setting DOMAIN to $DEFAULT_DOMAIN
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
147 DOMAIN=$DEFAULT_DOMAIN
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
148 # setting the environmental variable GLASSFISH_DOMAIN,
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
149 # for the ../installer/glassfish-setup.sh script, that runs
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
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150 # all the required asadmin comands
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
151 GLASSFISH_DOMAIN=$DOMAIN; export GLASSFISH_DOMAIN
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
152 fi
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
153 DOMAIN_DIR=$GLASSFISH_ROOT/glassfish/domains/$DOMAIN
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
154 if [ ! -d "$DOMAIN_DIR" ]
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
155 then
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
156 echo Domain directory '$DOMAIN_DIR' does not exist
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
157 exit 2
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
158 fi
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
159 if [ -z "$ASADMIN_OPTS" ]
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
160 then
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
161 ASADMIN_OPTS=$DEFAULT_ASADMIN_OPTS; export ASADMIN_OPTS
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
162 fi
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
163
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
164 echo "Setting up your glassfish4 to support Dataverse"
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
165 echo "Glassfish directory: "$GLASSFISH_ROOT
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
166 echo "Domain directory: "$DOMAIN_DIR
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
167
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
168 ###
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
169 # getting the postgres driver
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
170 DOMAIN_LIB=$DOMAIN_DIR/lib
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
171 if ! grep -qs postgres $DOMAIN_LIB/*
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
172 then
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
173 DRIVER_NAME=$(echo $PGSQL_DRIVER_URL | tr / \\n | tail -n1)
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
174 echo Downloading postgresql driver '$DRIVER_NAME'
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
175 wget $PGSQL_DRIVER_URL -O $DOMAIN_LIB/$DRIVER_NAME
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
176 else
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
177 echo postgresql driver already installed.
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
178 fi
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
179
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
180 if [ "$SUDO_USER" = "vagrant" ]
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
181 then
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
182 /scripts/installer/glassfish-setup.sh
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
183 echo "Done configuring Vagrant environment"
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
184 exit 0
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
185 fi
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
186
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
187 ###
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
188 # Move to the glassfish dir
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
189 pushd $GLASSFISH_BIN_DIR
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
190
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
191 ###
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Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
192 # take the domain up, if needed.
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
193 DOMAIN_DOWN=$(./asadmin list-domains | grep "$DOMAIN " | grep "not running")
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
194 if [ $(echo $DOMAIN_DOWN|wc -c) -ne 1 ];
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
195 then
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
196 echo Trying to start domain $DOMAIN up...
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
197 ./asadmin $ASADMIN_OPTS start-domain $DOMAIN
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
198 else
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
199 echo domain running
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
200 fi
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
201
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
202 # ONCE AGAIN, ASADMIN COMMANDS BELOW HAVE ALL BEEN MOVED INTO scripts/installer/glassfish-setup.sh
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
203
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
204 # TODO: diagnostics
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
205
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
206 ###
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
207 # Clean up
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
208 popd
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
209
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
210 echo "Glassfish setup complete"
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
211 date
a50cf11e5178 Rewrite LGDataverse completely upgrading to dataverse4.0
Zoe Hong <zhong@mpiwg-berlin.mpg.de>
parents:
diff changeset
212