# HG changeset patch
# User dwinter
# Date 1323794811 -3600
# Node ID f986e74583eba3c459f5b9a83b894b844a2c889d
# Parent e3ecb88314a59a453922e0f6202afa58499b43db
removed triplestorehandler componentes
diff -r e3ecb88314a5 -r f986e74583eb .classpath
--- a/.classpath Fri Dec 02 08:37:03 2011 +0100
+++ b/.classpath Tue Dec 13 17:46:51 2011 +0100
@@ -33,5 +33,6 @@
+
diff -r e3ecb88314a5 -r f986e74583eb .project
--- a/.project Fri Dec 02 08:37:03 2011 +0100
+++ b/.project Tue Dec 13 17:46:51 2011 +0100
@@ -34,6 +34,11 @@
+ ontologies
+ 2
+ virtual:/virtual
+
+
libs/virtjdbc3.jar
1
PARENT-7-PROJECT_LOC/usr/local/virtuoso-opensource/lib/jdbc-3.0/virtjdbc3.jar
@@ -53,5 +58,415 @@
1
PARENT-7-PROJECT_LOC/usr/local/virtuoso-opensource/lib/jdbc-4.0/virtjdbc4ssl.jar
+
+ ontologies/.hg
+ 2
+ virtual:/virtual
+
+
+ ontologies/.project
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.project
+
+
+ ontologies/MPIWGGeneral.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/MPIWGGeneral.owl
+
+
+ ontologies/MPIWGGeneral.pprj
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/MPIWGGeneral.pprj
+
+
+ ontologies/MPIWGGeneral.repository
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/MPIWGGeneral.repository
+
+
+ ontologies/annotation-ns.rdf
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/annotation-ns.rdf
+
+
+ ontologies/annotationType.rdf
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/annotationType.rdf
+
+
+ ontologies/annotations.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/annotations.owl
+
+
+ ontologies/annotations.pprj
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/annotations.pprj
+
+
+ ontologies/annotations.repository
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/annotations.repository
+
+
+ ontologies/annotations_annotator.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/annotations_annotator.owl
+
+
+ ontologies/annotations_annotator.pprj
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/annotations_annotator.pprj
+
+
+ ontologies/annotations_annotator.repository
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/annotations_annotator.repository
+
+
+ ontologies/catalog-v001.xml
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/catalog-v001.xml
+
+
+ ontologies/dbpedia_3.6.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/dbpedia_3.6.owl
+
+
+ ontologies/dcterms.rdf
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/dcterms.rdf
+
+
+ ontologies/ecrm_110404.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/ecrm_110404.owl
+
+
+ ontologies/ecrm_plus_110404_dw.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/ecrm_plus_110404_dw.owl
+
+
+ ontologies/foaf.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/foaf.owl
+
+
+ ontologies/namedIdentities.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/namedIdentities.owl
+
+
+ ontologies/namedIdentities.owl~
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/namedIdentities.owl~
+
+
+ ontologies/namedIdentities.pprj
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/namedIdentities.pprj
+
+
+ ontologies/namedIdentities.repository
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/namedIdentities.repository
+
+
+ ontologies/namedIdentitiesTest.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/namedIdentitiesTest.owl
+
+
+ ontologies/namedIdentitiesTest.pprj
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/namedIdentitiesTest.pprj
+
+
+ ontologies/namedIdentitiesTest.repository
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/namedIdentitiesTest.repository
+
+
+ ontologies/openannotation.rdf
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/openannotation.rdf
+
+
+ ontologies/personsLibrary.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/personsLibrary.owl
+
+
+ ontologies/personsLibrary.pprj
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/personsLibrary.pprj
+
+
+ ontologies/personsLibrary.repository
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/personsLibrary.repository
+
+
+ ontologies/rdf-schema
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/rdf-schema
+
+
+ ontologies/skos-owl1-dl.rdf
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/skos-owl1-dl.rdf
+
+
+ ontologies/test.owl
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/test.owl
+
+
+ ontologies/test.repository
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/test.repository
+
+
+ ontologies/.hg/00changelog.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/00changelog.i
+
+
+ ontologies/.hg/cache
+ 2
+ virtual:/virtual
+
+
+ ontologies/.hg/dirstate
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/dirstate
+
+
+ ontologies/.hg/last-message.txt
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/last-message.txt
+
+
+ ontologies/.hg/requires
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/requires
+
+
+ ontologies/.hg/store
+ 2
+ virtual:/virtual
+
+
+ ontologies/.hg/undo.bookmarks
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/undo.bookmarks
+
+
+ ontologies/.hg/undo.branch
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/undo.branch
+
+
+ ontologies/.hg/undo.desc
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/undo.desc
+
+
+ ontologies/.hg/undo.dirstate
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/undo.dirstate
+
+
+ ontologies/.hg/cache/tags
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/cache/tags
+
+
+ ontologies/.hg/store/00changelog.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/00changelog.i
+
+
+ ontologies/.hg/store/00manifest.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/00manifest.i
+
+
+ ontologies/.hg/store/data
+ 2
+ virtual:/virtual
+
+
+ ontologies/.hg/store/fncache
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/fncache
+
+
+ ontologies/.hg/store/undo
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/undo
+
+
+ ontologies/.hg/store/data/_m_p_i_w_g_general.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/_m_p_i_w_g_general.owl.i
+
+
+ ontologies/.hg/store/data/_m_p_i_w_g_general.pprj.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/_m_p_i_w_g_general.pprj.i
+
+
+ ontologies/.hg/store/data/_m_p_i_w_g_general.repository.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/_m_p_i_w_g_general.repository.i
+
+
+ ontologies/.hg/store/data/annotation-ns.rdf.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/annotation-ns.rdf.i
+
+
+ ontologies/.hg/store/data/annotation_type.rdf.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/annotation_type.rdf.i
+
+
+ ontologies/.hg/store/data/annotations.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/annotations.owl.i
+
+
+ ontologies/.hg/store/data/annotations.pprj.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/annotations.pprj.i
+
+
+ ontologies/.hg/store/data/annotations.repository.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/annotations.repository.i
+
+
+ ontologies/.hg/store/data/annotations__annotator.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/annotations__annotator.owl.i
+
+
+ ontologies/.hg/store/data/annotations__annotator.pprj.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/annotations__annotator.pprj.i
+
+
+ ontologies/.hg/store/data/annotations__annotator.repository.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/annotations__annotator.repository.i
+
+
+ ontologies/.hg/store/data/catalog-v001.xml.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/catalog-v001.xml.i
+
+
+ ontologies/.hg/store/data/dbpedia__3.6.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/dbpedia__3.6.owl.i
+
+
+ ontologies/.hg/store/data/dcterms.rdf.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/dcterms.rdf.i
+
+
+ ontologies/.hg/store/data/ecrm__110404.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/ecrm__110404.owl.i
+
+
+ ontologies/.hg/store/data/ecrm__plus__110404__dw.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/ecrm__plus__110404__dw.owl.i
+
+
+ ontologies/.hg/store/data/foaf.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/foaf.owl.i
+
+
+ ontologies/.hg/store/data/named_identities.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/named_identities.owl.i
+
+
+ ontologies/.hg/store/data/named_identities.pprj.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/named_identities.pprj.i
+
+
+ ontologies/.hg/store/data/named_identities.repository.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/named_identities.repository.i
+
+
+ ontologies/.hg/store/data/named_identities_test.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/named_identities_test.owl.i
+
+
+ ontologies/.hg/store/data/named_identities_test.pprj.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/named_identities_test.pprj.i
+
+
+ ontologies/.hg/store/data/named_identities_test.repository.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/named_identities_test.repository.i
+
+
+ ontologies/.hg/store/data/openannotation.rdf.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/openannotation.rdf.i
+
+
+ ontologies/.hg/store/data/persons_library.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/persons_library.owl.i
+
+
+ ontologies/.hg/store/data/persons_library.pprj.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/persons_library.pprj.i
+
+
+ ontologies/.hg/store/data/persons_library.repository.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/persons_library.repository.i
+
+
+ ontologies/.hg/store/data/rdf-schema.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/rdf-schema.i
+
+
+ ontologies/.hg/store/data/skos-owl1-dl.rdf.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/skos-owl1-dl.rdf.i
+
+
+ ontologies/.hg/store/data/test.owl.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/test.owl.i
+
+
+ ontologies/.hg/store/data/test.repository.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/test.repository.i
+
+
+ ontologies/.hg/store/data/~2eproject.i
+ 1
+ PARENT-1-PROJECT_LOC/MPIWG-ontologies/.hg/store/data/~2eproject.i
+
diff -r e3ecb88314a5 -r f986e74583eb src/de/mpiwg/itgroup/nimanager/exceptions/TripleStoreHandlerException.java
--- a/src/de/mpiwg/itgroup/nimanager/exceptions/TripleStoreHandlerException.java Fri Dec 02 08:37:03 2011 +0100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,10 +0,0 @@
-package de.mpiwg.itgroup.nimanager.exceptions;
-
-public class TripleStoreHandlerException extends Exception {
-
- /**
- *
- */
- private static final long serialVersionUID = -491859023038922276L;
-
-}
diff -r e3ecb88314a5 -r f986e74583eb src/de/mpiwg/itgroup/nimanager/importer/Import.java
--- a/src/de/mpiwg/itgroup/nimanager/importer/Import.java Fri Dec 02 08:37:03 2011 +0100
+++ b/src/de/mpiwg/itgroup/nimanager/importer/Import.java Tue Dec 13 17:46:51 2011 +0100
@@ -31,9 +31,11 @@
import com.hp.hpl.jena.graph.impl.LiteralLabel;
-import de.mpiwg.itgroup.nimanager.exceptions.TripleStoreHandlerException;
-import de.mpiwg.itgroup.nimanager.owl.MetaDataHandler;
-import de.mpiwg.itgroup.nimanager.owl.TripleStoreHandler;
+import de.mpiwg.itgroup.triplestoremanager.exceptions.TripleStoreHandlerException;
+import de.mpiwg.itgroup.triplestoremanager.owl.MetaDataHandler;
+import de.mpiwg.itgroup.triplestoremanager.owl.TripleStoreHandler;
+
+
import edu.stanford.smi.protegex.owl.jena.JenaOWLModel;
import edu.stanford.smi.protegex.owl.model.OWLIndividual;
import edu.stanford.smi.protegex.owl.model.RDFProperty;
diff -r e3ecb88314a5 -r f986e74583eb src/de/mpiwg/itgroup/nimanager/importer/ImportGND.java
--- a/src/de/mpiwg/itgroup/nimanager/importer/ImportGND.java Fri Dec 02 08:37:03 2011 +0100
+++ b/src/de/mpiwg/itgroup/nimanager/importer/ImportGND.java Tue Dec 13 17:46:51 2011 +0100
@@ -37,9 +37,12 @@
import com.hp.hpl.jena.graph.impl.LiteralLabel;
-import de.mpiwg.itgroup.nimanager.exceptions.TripleStoreHandlerException;
-import de.mpiwg.itgroup.nimanager.owl.MetaDataHandler;
-import de.mpiwg.itgroup.nimanager.owl.TripleStoreHandler;
+import de.mpiwg.itgroup.triplestoremanager.exceptions.TripleStoreHandlerException;
+import de.mpiwg.itgroup.triplestoremanager.owl.MetaDataHandler;
+import de.mpiwg.itgroup.triplestoremanager.owl.TripleStoreHandler;
+
+
+
import edu.stanford.smi.protegex.owl.jena.JenaOWLModel;
import edu.stanford.smi.protegex.owl.model.OWLIndividual;
import edu.stanford.smi.protegex.owl.model.RDFProperty;
diff -r e3ecb88314a5 -r f986e74583eb src/de/mpiwg/itgroup/nimanager/luceneIndices/Importer.java
--- a/src/de/mpiwg/itgroup/nimanager/luceneIndices/Importer.java Fri Dec 02 08:37:03 2011 +0100
+++ b/src/de/mpiwg/itgroup/nimanager/luceneIndices/Importer.java Tue Dec 13 17:46:51 2011 +0100
@@ -1,5 +1,5 @@
/*
- * Klasse importiert Werte von Triple in einen Lucene Index fŸr die schnellere Suche.
+ * Klasse importiert Werte von Triple in einen Lucene Index f�r die schnellere Suche.
*/
package de.mpiwg.itgroup.nimanager.luceneIndices;
@@ -26,8 +26,8 @@
import org.openrdf.repository.RepositoryException;
import org.openrdf.repository.RepositoryResult;
-import de.mpiwg.itgroup.nimanager.exceptions.TripleStoreHandlerException;
-import de.mpiwg.itgroup.nimanager.owl.TripleStoreHandler;
+import de.mpiwg.itgroup.triplestoremanager.exceptions.TripleStoreHandlerException;
+import de.mpiwg.itgroup.triplestoremanager.owl.TripleStoreHandler;
public class Importer {
diff -r e3ecb88314a5 -r f986e74583eb src/de/mpiwg/itgroup/nimanager/owl/MetaDataHandler.java
--- a/src/de/mpiwg/itgroup/nimanager/owl/MetaDataHandler.java Fri Dec 02 08:37:03 2011 +0100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,285 +0,0 @@
-package de.mpiwg.itgroup.nimanager.owl;
-
-import java.io.File;
-import java.net.MalformedURLException;
-import java.net.URI;
-import java.net.URISyntaxException;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-
-import org.apache.log4j.Logger;
-import org.openrdf.repository.RepositoryException;
-
-import com.hp.hpl.jena.graph.impl.LiteralLabel;
-import com.hp.hpl.jena.util.FileUtils;
-
-import de.mpiwg.itgroup.nimanager.exceptions.TripleStoreHandlerException;
-
-import edu.stanford.smi.protege.exception.OntologyLoadException;
-import edu.stanford.smi.protege.storage.xml.XMLString;
-import edu.stanford.smi.protegex.owl.ProtegeOWL;
-import edu.stanford.smi.protegex.owl.jena.JenaOWLModel;
-import edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator;
-import edu.stanford.smi.protegex.owl.model.OWLIndividual;
-import edu.stanford.smi.protegex.owl.model.OWLModel;
-import edu.stanford.smi.protegex.owl.model.OWLNamedClass;
-import edu.stanford.smi.protegex.owl.model.RDFProperty;
-import edu.stanford.smi.protegex.owl.model.RDFResource;
-import edu.stanford.smi.protegex.owl.model.RDFSNamedClass;
-import edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass;
-import edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty;
-import edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass;
-import edu.stanford.smi.protegex.owl.repository.RepositoryManager;
-import edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepository;
-import edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles;
-import edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager;
-
-public class MetaDataHandler {
-
- String ontologieUriString = "file:///Users/dwinter/Documents/Projekte/ECHO-eSciDoc-MPDL/escidocMPIWG/NamedIdentityManager/ontologies/namedIdentities.owl";
- //String rdfUriString = "file:///Users/dwinter/Documents/Projekte/ECHO-eSciDoc-MPDL/escidocMPIWG/NamedIdentityManager/ontologies/rdf-schema";
- String owlFolder = "/Users/dwinter/Documents/Projekte/ECHO-eSciDoc-MPDL/escidocMPIWG/NamedIdentityManager/ontologies";
-
- static MetaDataHandler instance=null;
-
- private JenaOWLModel owlModel;
-
- public JenaOWLModel getOwlModel() {
- return owlModel;
- }
-
- private Logger logger = Logger.getRootLogger();
-
- public MetaDataHandler() {
- try {
- URI ontologieUri = new URI(ontologieUriString);
- loadOWL(owlFolder, ontologieUri);
- } catch (URISyntaxException e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- return;
- } catch (OntologyLoadException e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
- logger.info("initialized handler");
-
- }
-
-// public JenaOWLModel createMyJenaOWLModelFromURI(String uri) throws OntologyLoadException {
-// //Collection errors = new ArrayList();
-// OwlProjectFromUriCreator creator = new OwlProjectFromUriCreator();
-// creator.setLang(FileUtils.
-// creator.setOntologyUri(uri);
-// //creator.create(errors);
-// JenaOWLModel owlModel = creator.getOwlModel();
-// //handleErrors(errors);
-// return owlModel;
-// }
-
- public void loadOWL(String folder, URI uri) throws OntologyLoadException {
- //owlModel = ProtegeOWL.createJenaOWLModel();
-
- owlModel = ProtegeOWL.createJenaOWLModelFromURI(ontologieUriString);
-
- //ProfilesManager.setProfile(owlModel, OWLProfiles.RDFSClass_but_not_OWLClass_Type.getURI());
- // Load repository
- RepositoryManager rman = owlModel.getRepositoryManager();
-
- // Add working directory to repository manager.
- File workingDirectory = new File(folder);
- rman.addGlobalRepository(new LocalFolderRepository(workingDirectory));
-
- LocalFolderRepository localRepository = new LocalFolderRepository(new File("/tmp"));
- rman.addProjectRepository(localRepository);
-
-
-
-
- // Load ontology
-
- //((JenaOWLModel) owlModel).load(uri, "OWL-FULL");
- }
-
- /**
- * Gibt alle Properties der Klasse zurueck, d.h. auch diejenigen die inferiert werden.
- * @param string
- * @return
- */
- public Set getAssociatedPropsForClass(String string) {
-
-
-
- OWLNamedClass owlclass;
- try {
- owlclass = (OWLNamedClass) owlModel.getOWLNamedClass(string);
- } catch (Exception e) {
- logger.debug("Problem getting OWLClass, try RDFS later.");
- //wenn eine Klasse sowohl eine RDFS als auch per Zuordnung in der Ontologie eine OWL classe ist, wir hier eine Fehler ausgeworfen:
- //java.lang.ClassCastException: edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass cannot be cast to edu.stanford.smi.protegex.owl.model.OWLNamedClass
- //at edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getOWLNamedClass(Unknown Source)
- owlclass= null;
- }
-
- if (owlclass != null) {
- return owlclass.getAssociatedProperties();
- } else {
- logger.debug("Cannot find OWLClass:" + string);
- logger.debug("Trying RDFSClass");
- RDFSNamedClass rdfsclass=(RDFSNamedClass)owlModel.getRDFSNamedClass(string);
- if (rdfsclass != null) {
- return rdfsclass.getAssociatedProperties();
- } else {
- logger.debug("Cannot find RDFSClass:" + string);
- return null;
- }
- }
-
-
-
- }
-
- /**
- * Gibt alle direkten Properties der angegebenen Klasse zurueck.
- * @param string
- * @return
- */
- public Collection getDirectPropsForClass(String string, Boolean transitiv) {
-
-
-
- OWLNamedClass owlclass;
- try {
- owlclass = (OWLNamedClass) owlModel.getOWLNamedClass(string);
- } catch (Exception e) {
- logger.debug("Problem getting OWLClass, try RDFS later.");
- //wenn eine Klasse sowohl eine RDFS als auch per Zuordnung in der Ontologie eine OWL classe ist, wir hier eine Fehler ausgeworfen:
- //java.lang.ClassCastException: edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass cannot be cast to edu.stanford.smi.protegex.owl.model.OWLNamedClass
- //at edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getOWLNamedClass(Unknown Source)
- owlclass= null;
- }
-
- if (owlclass != null) {
- return owlclass.getUnionDomainProperties(transitiv);
- } else {
- logger.debug("Cannot find OWLClass:" + string);
- logger.debug("Trying RDFSClass");
- RDFSNamedClass rdfsclass=(RDFSNamedClass)owlModel.getRDFSNamedClass(string);
- if (rdfsclass != null) {
-
- return rdfsclass.getUnionDomainProperties(transitiv);
- } else {
- logger.debug("Cannot find RDFSClass:" + string);
- return null;
- }
- }
-
-
-
- }
-
-
- public List getEquivalentClasses(String string) {
- OWLNamedClass owlclass = (OWLNamedClass) owlModel
- .getOWLNamedClass(string);
-
- List retList = new ArrayList();
- Collection eqClasses = owlclass.getEquivalentClasses();
- Iterator it = eqClasses.iterator();
- while(it.hasNext()){
- Object cls = it.next();
- String name = "";
- if (DefaultOWLNamedClass.class.isInstance(cls)){
- name=((DefaultOWLNamedClass)cls).getName();
- } else if (DefaultRDFSNamedClass.class.isInstance(cls)){
- name=((DefaultRDFSNamedClass)cls).getName();
- }
- retList.add(name);
-
- }
-
- return retList;
- }
-
-
- public static void main(String args[]) throws RepositoryException, TripleStoreHandlerException {
- TripleStoreHandler th = new TripleStoreHandler("jdbc:virtuoso://virtuoso.mpiwg-berlin.mpg.de:1111", "dba", "dba");
- MetaDataHandler mh = new MetaDataHandler();
-
- //Set props= mh.getPropsForClass("http://dbpedia.org/ontology/Person");
-
- mh.getEquivalentClasses("http://dbpedia.org/ontology/Person");
-
- //Map ret = th.getValues(props,"");
-
- //Map ret = th.getResources("http://xmlns.com/foaf/0.1/name","Abraham Lincoln","en");
- //System.out.println(ret);
- }
-
- public OWLIndividual generateEntity(String clsName, Map values) {
- OWLNamedClass owlclass = (OWLNamedClass) owlModel
- .getOWLNamedClass(clsName);
-
- OWLIndividual inst = (OWLIndividual) owlclass.createInstance(null);
- for(String key:values.keySet()){
- RDFProperty property =owlModel.getRDFProperty(key);
- inst.setPropertyValue(property, values.get(key));
-
-
- }
-
- return inst;
- }
-
- public OWLIndividual generateEntity(String clsName, String instanceName) {
- OWLNamedClass owlclass = (OWLNamedClass) owlModel
- .getOWLNamedClass(clsName);
-
- OWLIndividual inst = (OWLIndividual) owlclass.createInstance(instanceName);
-
-
- return inst;
- }
-
- public OWLIndividual generateEntity(String clsName, String instanceName, Map values) {
- OWLNamedClass owlclass = (OWLNamedClass) owlModel
- .getOWLNamedClass(clsName);
-
- OWLIndividual inst = (OWLIndividual) owlclass.createInstance(instanceName);
-
- for(String key:values.keySet()){
- RDFProperty property =owlModel.getRDFProperty(key);
- inst.setPropertyValue(property, values.get(key));
-
-
- }
-
- return inst;
- }
-
- public void printIndividual(OWLIndividual ind){
- Collection props = ind.getRDFProperties();
- Iterator propsIts = props.iterator();
- while(propsIts.hasNext()){
- RDFProperty prop = propsIts.next();
- System.err.println(prop.getName()+":"+ind.getPropertyValue(prop));
- }
- }
-
- public static MetaDataHandler getInstance(){
-
- if (instance==null){
- instance = new MetaDataHandler();
- }
- return instance;
- }
-
-
-
-
-}
diff -r e3ecb88314a5 -r f986e74583eb src/de/mpiwg/itgroup/nimanager/owl/TripleStoreHandler.java
--- a/src/de/mpiwg/itgroup/nimanager/owl/TripleStoreHandler.java Fri Dec 02 08:37:03 2011 +0100
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,474 +0,0 @@
-package de.mpiwg.itgroup.nimanager.owl;
-
-import info.aduna.iteration.Iteration;
-
-import java.io.File;
-import java.io.FileNotFoundException;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.OutputStream;
-import java.net.MalformedURLException;
-import java.net.URL;
-import java.sql.Connection;
-import java.sql.DriverManager;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-
-import org.apache.log4j.Logger;
-import org.openrdf.model.Resource;
-import org.openrdf.model.Statement;
-import org.openrdf.model.URI;
-import org.openrdf.model.Value;
-import org.openrdf.model.impl.ContextStatementImpl;
-import org.openrdf.model.impl.LiteralImpl;
-import org.openrdf.model.impl.StatementImpl;
-import org.openrdf.model.impl.URIImpl;
-import org.openrdf.query.MalformedQueryException;
-import org.openrdf.query.QueryEvaluationException;
-import org.openrdf.query.QueryLanguage;
-import org.openrdf.query.TupleQuery;
-import org.openrdf.query.TupleQueryResult;
-import org.openrdf.query.impl.DatasetImpl;
-import org.openrdf.repository.Repository;
-import org.openrdf.repository.RepositoryConnection;
-import org.openrdf.repository.RepositoryException;
-import org.openrdf.repository.RepositoryResult;
-import org.openrdf.repository.http.HTTPRepository;
-import org.openrdf.rio.RDFHandlerException;
-import org.openrdf.rio.rdfxml.RDFXMLWriter;
-
-import virtuoso.sesame2.driver.VirtuosoRepository;
-
-import com.hp.hpl.jena.vocabulary.OWL;
-
-import de.mpiwg.itgroup.nimanager.exceptions.TripleStoreHandlerException;
-import de.mpiwg.itgroup.nimanager.owl.TripleStoreHandler.Quadruple;
-
-
-import edu.stanford.smi.protege.widget.StringListWidget;
-import edu.stanford.smi.protegex.owl.model.OWLIndividual;
-import edu.stanford.smi.protegex.owl.model.OWLModel;
-import edu.stanford.smi.protegex.owl.model.OWLNamedClass;
-import edu.stanford.smi.protegex.owl.model.RDFProperty;
-import edu.stanford.smi.protegex.owl.model.RDFResource;
-import edu.stanford.smi.protegex.owl.model.RDFSLiteral;
-import edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass;
-import edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty;
-
-
-
-public class TripleStoreHandler {
-
-
- public static class Quadruple {
- String subj;
- String pred;
- Object obj;
- String ctx;
-
- public String getSubj() {
- return subj;
- }
-
- public String getPred() {
- return pred;
- }
-
- public Object getObj() {
- return obj;
- }
-
- public String getCtx() {
- return ctx;
- }
-
-
-
- public Quadruple(String s, String p, String o,String c){
- subj=s;
- pred=p;
- obj=o;
- ctx=c;
- }
-
-
- public Quadruple(String s, String p, Value o,String c){
- subj=s;
- pred=p;
- obj=o;
- ctx=c;
- }
-
- public String toString(){
- return String.format("%s %s %s %s.", subj,pred,obj,ctx);
- }
-
-
- }
-
- public static class LiteralQuadruple extends Quadruple{
- String subj;
- String pred;
- Object obj;
- String ctx;
-
- public LiteralQuadruple(String s, String p, String o,String c){
- super(s,p,o,c);
-
-
- }
-
- }
- public static String ONTOLOGY_NS="http://ontologies.mpiwg-berlin.mpg.de/authorities/namedIdentities/";
- private boolean save=true; // wenn false dann schreibt write nicht ins repositorium.
-
- private Logger logger = Logger.getRootLogger();
-
- static Map instance = new HashMap();
- private Repository repository;
-
- private int counter=0;
- public Connection sqlCon;
- public Repository getRepository() {
- return repository;
- }
- public void setRepository(Repository repository) {
- this.repository = repository;
- }
- public TripleStoreHandler(String url,String username, String password) throws TripleStoreHandlerException {
- //String sesameUrl="http://127.0.0.1:8180/openrdf-sesame/repositories/authorityDataPersons";
- //String sesameUrl="http://127.0.0.1:8180/openrdf-sesame/repositories/personsRepository";
-
- //String sesameUrl="http://127.0.0.1:8180/openrdf-sesame/repositories/swiftowlimTest";
- //
- //repository = new HTTPRepository(sesameUrl);
-
-
- repository = new VirtuosoRepository(url, username, password);
- try {
- Class.forName("virtuoso.jdbc4.Driver");
- String connectString = url+"/charset=UTF-8";
- this.sqlCon = DriverManager.getConnection(connectString, username,
- password);
- } catch (Exception e) {
- throw new TripleStoreHandlerException();
- }
- }
- public Map getJenaRDFValues(Collection props, String identifier, OWLModel model) throws RepositoryException {
- identifier = identifier.replace("<", "");
- identifier = identifier.replace(">", "");
- Map retMap = new HashMap();
-
- URI subj= repository.getValueFactory().createURI(identifier);
- RepositoryConnection con = repository.getConnection();
- Iterator propsIterator = props.iterator();
- while(propsIterator.hasNext()){
- //for(DefaultRDFProperty prop:props){
- DefaultRDFProperty prop=(DefaultRDFProperty) propsIterator.next();
- Object newValue;
- String name=prop.getName();
- //System.out.println(name);
- RepositoryResult statements = con.getStatements(subj, repository.getValueFactory().createURI(name), null, true);
- //RepositoryResult statements = con.getStatements(subj, null, null, false);
- //System.out.println(statements);
- statements.enableDuplicateFilter();
- while(statements.hasNext()){
- Statement sm = statements.next();
- Value val = sm.getObject();
- if (LiteralImpl.class.isInstance(val)) { // wenn ein
- // string
- // literal,
- // dann
- // uebersetze
- // in jena
- // string
- // literal
- LiteralImpl li = (LiteralImpl) val;
-
- newValue = model.createRDFSLiteralOrString(li.getLabel(),li.getLanguage());
- } else { // anderfalls erzeuge generische Instance
-
-
- newValue= model.getRDFResource(val.stringValue());
-
- if (newValue==null){
- OWLNamedClass owlclass = (OWLNamedClass) model
- .getOWLNamedClass("http://www.w3.org/2002/07/owl#Thing");
- newValue = (OWLIndividual) owlclass.createInstance(val.stringValue());
- }
- }
- retMap.put(sm.getPredicate().stringValue(), newValue);
-
- }
- }
- return retMap;
-
- }
- public Map getResources(String subj, String pred, String obj, String lang) throws RepositoryException {
-
- Map retMap = new HashMap();
- RepositoryConnection con = repository.getConnection();
- RepositoryResult statements = con.getStatements(repository.getValueFactory().createURI(subj), repository.getValueFactory().createURI(pred), repository.getValueFactory().createLiteral(obj, lang), true);
- statements.enableDuplicateFilter();
- while(statements.hasNext()){
- Statement sm = statements.next();
- retMap.put(sm.getSubject().stringValue(), sm.getObject().stringValue());
-
- }
-
- return retMap;
- }
-
- public TupleQueryResult querySPARQL(String queryString) throws MalformedQueryException, QueryEvaluationException, TripleStoreHandlerException{
- TupleQuery tupleQuery;
- try {
- tupleQuery = repository.getConnection().prepareTupleQuery(QueryLanguage.SPARQL, queryString);
- } catch (RepositoryException e) {
- // possible a time out
- //wait a bit
- try {
- Thread.sleep(10000);
- //try again
- tupleQuery = repository.getConnection().prepareTupleQuery(QueryLanguage.SPARQL, queryString);
- } catch (InterruptedException e1) {
- e1.printStackTrace();
- throw new TripleStoreHandlerException();
- } catch (RepositoryException e2) {
- try {
- //ok try ones more
- Thread.sleep(10000);
- tupleQuery = repository.getConnection().prepareTupleQuery(QueryLanguage.SPARQL, queryString);
- } catch (InterruptedException e1) {
- e1.printStackTrace();
- throw new TripleStoreHandlerException();
- } catch (RepositoryException e3) {
- e.printStackTrace();
- throw new TripleStoreHandlerException();
-
- }
- }
- }
- return tupleQuery.evaluate();
-
- }
-
- public TupleQueryResult querySPARQL(String queryString,String context) throws RepositoryException, MalformedQueryException, QueryEvaluationException{
- TupleQuery tupleQuery = repository.getConnection().prepareTupleQuery(QueryLanguage.SPARQL, queryString);
- DatasetImpl ds = new DatasetImpl();
- ds.addNamedGraph(createUri(repository,context));
- tupleQuery.setDataset(ds);
- return tupleQuery.evaluate();
-
- }
- public RepositoryResult getStatements(String subj,String pred, String obj) throws RepositoryException {
- RepositoryConnection con = repository.getConnection();
-
- RepositoryResult statements = con.getStatements(createUri(repository,subj), createUri(repository,pred), createUri(repository,obj), true);
-
-
- return statements;
- }
-
- public RepositoryResult getStatements(String subj,String pred, String obj, String ctx) throws RepositoryException {
- RepositoryConnection con = repository.getConnection();
-
- RepositoryResult statements = con.getStatements(createUri(repository,subj), createUri(repository,pred), createUri(repository,obj), true, createUri(repository, ctx));
-
-
- return statements;
- }
-
- public RepositoryResult getStatements(Resource subj,URI pred, Value obj, String ctx) throws RepositoryException {
- RepositoryConnection con = repository.getConnection();
-
- RepositoryResult statements = con.getStatements(subj, pred, obj, true, createUri(repository, ctx));
-
-
- return statements;
- }
-
- public URI createUri(String subj){
- return createUri(repository, subj);
- }
-
- public Value createLiteral(String subj){
- return repository.getValueFactory().createLiteral(subj);
- }
-
- public Value createLiteral(String subj, String lang){
- return repository.getValueFactory().createLiteral(subj,lang);
- }
-
-
- public static URI createUri(Repository repository2, String subj) {
- if (subj==null)
- return null;
- return repository2.getValueFactory().createURI(subj);
-
- }
- public static Statement getFirstStatement(
- RepositoryResult namesStatements) throws RepositoryException {
- while(namesStatements.hasNext()){
- return namesStatements.next();
- }
-
- return null;
- }
- public void write(OWLIndividual ent,String ctx) throws RepositoryException, TripleStoreHandlerException {
-
-
- String ident = ent.getURI();
-// Iterator