annotate src/main/java/de/mpiwg/itgroup/annotations/restlet/BaseRestlet.java @ 89:247cbbb385de

improved logging.
author casties
date Wed, 04 Feb 2015 19:37:02 +0100
parents e3f0613b2f2d
children fcb6fe10e08c
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1 package de.mpiwg.itgroup.annotations.restlet;
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2
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3 /*
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4 * #%L
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5 * AnnotationManager
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6 * %%
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7 * Copyright (C) 2012 - 2014 MPIWG Berlin
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8 * %%
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9 * This program is free software: you can redistribute it and/or modify
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10 * it under the terms of the GNU Lesser General Public License as
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11 * published by the Free Software Foundation, either version 3 of the
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12 * License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful,
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15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 * GNU General Lesser Public License for more details.
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18 *
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19 * You should have received a copy of the GNU General Lesser Public
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20 * License along with this program. If not, see
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21 * <http://www.gnu.org/licenses/lgpl-3.0.html>.
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22 * #L%
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23 * Author: Robert Casties (casties@mpiwg-berlin.mpg.de),
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24 * Dirk Wintergruen (dwinter@mpiwg-berlin.mpg.de)
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25 */
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26
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27 import java.io.File;
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28 import java.io.FileInputStream;
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29 import java.io.FileNotFoundException;
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30 import java.io.IOException;
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31 import java.io.InputStream;
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32 import java.util.Hashtable;
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33 import java.util.Properties;
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34 import java.util.concurrent.ConcurrentMap;
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35 import java.util.logging.Logger;
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36
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37 import javax.naming.NamingEnumeration;
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38 import javax.naming.NamingException;
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39 import javax.naming.directory.Attribute;
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40 import javax.naming.directory.DirContext;
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41 import javax.naming.directory.InitialDirContext;
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42 import javax.naming.directory.SearchControls;
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43 import javax.naming.directory.SearchResult;
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44 import javax.servlet.ServletContext;
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45
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46 import org.neo4j.graphdb.GraphDatabaseService;
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47 import org.neo4j.graphdb.factory.GraphDatabaseBuilder;
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48 import org.neo4j.graphdb.factory.GraphDatabaseFactory;
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49 import org.neo4j.graphdb.factory.GraphDatabaseSettings;
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50 import org.neo4j.kernel.GraphDatabaseAPI;
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51 import org.neo4j.server.WrappingNeoServerBootstrapper;
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52 import org.restlet.Application;
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53 import org.restlet.Context;
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54
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55 import de.mpiwg.itgroup.annotations.neo4j.AnnotationStore;
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56
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57 public abstract class BaseRestlet extends Application {
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58
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59 public static Logger logger = Logger.getLogger(BaseRestlet.class.getCanonicalName());
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60
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61 /**
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62 * Properties holding consumer keys and secrets.
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63 */
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64 protected Properties consumerKeys;
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65 public String CONSUMER_KEYS_PATH = "consumerkeys.property";
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66 public static final String CONSUMERKEYS_KEY = "annotationmanager.consumerkeys";
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68 /**
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69 * Properties holding server config.
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70 */
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71 protected Properties serverConfig;
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72 public String CONFIG_PROPS_PATH = "serverconfig.property";
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73 public static final String SERVERCONFIG_KEY = "annotationmanager.serverconfig";
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75 /**
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76 * database instance;
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77 */
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78 protected GraphDatabaseService graphDb;
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79 public static final String GRAPHDB_KEY = "annotationmanager.graphdb";
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80 public static final String GRAPHDB_PATH_KEY = "annotationmanager.graphdb.path";
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81 public String graphdbPath = "neo4j-annotation-db";
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83 /**
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84 * database interface server instance.
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85 */
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86 protected WrappingNeoServerBootstrapper srv;
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87 public static final String GRAPHDBSRV_KEY = "annotationmanager.graphdb.srv";
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89 /**
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90 * annotation store instance.
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91 */
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92 protected AnnotationStore store;
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93 public static final String ANNSTORE_KEY = "annotationmanager.store";
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94
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95 /**
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96 * LDAP server URI (for looking up full user names).
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97 */
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98 protected String ldapServerUrl;
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99 public static final String LDAP_SERVER_KEY = "annotationmanager.ldapserver.url";
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100
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101 /**
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102 * web frontend admin user name
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103 */
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104 public static final String ADMIN_USER_KEY = "annotationmanager.admin.user";
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105 /**
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106 * web frontend admin user password
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107 */
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108 public static final String ADMIN_PASSWORD_KEY = "annotationmanager.admin.password";
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109
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110 /**
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111 * run in authorization mode i.e. with tokens.
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112 */
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113 protected boolean authorizationMode = false;
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114 public static final String AUTHORIZATION_MODE_KEY = "annotationmanager.authorization";
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115
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116 /**
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117 * prefix to create uris for tags in store.
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118 */
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119 public static String TAGS_URI_PREFIX = "";
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120 public static final String TAGS_URI_KEY = "annotationmanager.uris.tags";
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121
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122 /**
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123 * prefix to create uris for persons in store.
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124 */
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125 public static String PERSONS_URI_PREFIX = "";
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126 public static final String PERSONS_URI_KEY = "annotationmanager.uris.persons";
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127
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128 /**
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129 * prefix to create uris for groups in store.
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130 */
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131 public static String GROUPS_URI_PREFIX = "";
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132 public static final String GROUPS_URI_KEY = "annotationmanager.uris.groups";
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133
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134 public static final String ANNOTATIONS_URI_KEY = "annotationmanager.uris.annotations";
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135
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136
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137 /* (non-Javadoc)
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138 * @see org.restlet.Application#start()
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139 */
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140 @Override
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141 public synchronized void start() throws Exception {
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142 configure(getContext());
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143 super.start();
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144 }
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145
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146 /**
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147 * Configures the restlet.
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148 * Reads serverConfig, consumerKeys and graphDb config from config files and starts graphDb.
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149 * Uses config from webapp context if already initialized.
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150 * @param context
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151 */
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152 protected void configure(Context context) {
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153 ConcurrentMap<String, Object> attrs = context.getAttributes();
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154 ServletContext sc = (ServletContext) attrs.get("org.restlet.ext.servlet.ServletContext");
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155 if (sc != null) {
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156 logger.info(getVersion() + " starting...");
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157
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158 /*
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159 * read config from webapp
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160 */
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161 serverConfig = (Properties) sc.getAttribute(SERVERCONFIG_KEY);
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162 if (serverConfig == null) {
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163 serverConfig = new Properties();
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164 InputStream ps = getResourceAsStream(sc, CONFIG_PROPS_PATH);
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165 if (ps != null) {
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166 logger.fine("loading config from " + CONFIG_PROPS_PATH);
18
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167 try {
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168 serverConfig.load(ps);
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169 /*
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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170 * read serverconfig options
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171 */
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172 graphdbPath = serverConfig.getProperty(GRAPHDB_PATH_KEY, graphdbPath);
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173 ldapServerUrl = serverConfig.getProperty(LDAP_SERVER_KEY, null);
60
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diff changeset
174 /*
99d9afcfd04d configuration of uri prefixes was completely broken.
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175 * uri prefixes
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176 */
99d9afcfd04d configuration of uri prefixes was completely broken.
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diff changeset
177 if (serverConfig.containsKey(PERSONS_URI_KEY)) {
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178 BaseRestlet.PERSONS_URI_PREFIX = serverConfig.getProperty(PERSONS_URI_KEY);
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179 }
99d9afcfd04d configuration of uri prefixes was completely broken.
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diff changeset
180 if (serverConfig.containsKey(GROUPS_URI_KEY)) {
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181 BaseRestlet.GROUPS_URI_PREFIX = serverConfig.getProperty(GROUPS_URI_KEY);
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182 }
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diff changeset
183 if (serverConfig.containsKey(TAGS_URI_KEY)) {
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184 BaseRestlet.TAGS_URI_PREFIX = serverConfig.getProperty(TAGS_URI_KEY);
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185 }
99d9afcfd04d configuration of uri prefixes was completely broken.
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186 if (serverConfig.containsKey(ANNOTATIONS_URI_KEY)) {
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187 AnnotationStore.ANNOTATION_URI_PREFIX = serverConfig.getProperty(ANNOTATIONS_URI_KEY);
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188 }
18
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189 } catch (IOException e) {
75
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190 logger.warning("Error loading server config: "+e.toString());
18
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191 }
75
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192 logger.fine("config: " + serverConfig);
18
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193 } else {
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194 logger.severe("Unable to get resource " + CONFIG_PROPS_PATH);
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195 }
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196 // store config
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197 sc.setAttribute(SERVERCONFIG_KEY, serverConfig);
18
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198 }
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199 // look for database service in context
72
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200 graphDb = (GraphDatabaseService) sc.getAttribute(GRAPHDB_KEY);
18
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201 if (graphDb == null) {
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202 /*
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203 * open database
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204 */
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205 String dbFn = getResourcePath(sc, graphdbPath);
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206 if (dbFn != null) {
75
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207 logger.fine("opening DB " + dbFn);
66
5b568de5ee0d updated to new Neo4J version 2.0. doesn't use new features. problems with neo4j admin web ui.
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208 GraphDatabaseBuilder graphDbBuilder = new GraphDatabaseFactory().newEmbeddedDatabaseBuilder(dbFn);
5b568de5ee0d updated to new Neo4J version 2.0. doesn't use new features. problems with neo4j admin web ui.
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209 graphDbBuilder.setConfig(GraphDatabaseSettings.allow_store_upgrade, "true");
5b568de5ee0d updated to new Neo4J version 2.0. doesn't use new features. problems with neo4j admin web ui.
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210 graphDb = graphDbBuilder.newGraphDatabase();
18
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211 registerShutdownHook(graphDb);
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212 // store in context
72
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213 sc.setAttribute(GRAPHDB_KEY, graphDb);
18
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214 // AnnotationStore
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215 store = new AnnotationStore(graphDb);
72
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216 sc.setAttribute(ANNSTORE_KEY, store);
18
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217 // admin server
66
5b568de5ee0d updated to new Neo4J version 2.0. doesn't use new features. problems with neo4j admin web ui.
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218 srv = new WrappingNeoServerBootstrapper((GraphDatabaseAPI) graphDb);
75
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219 logger.fine("Starting DB admin server...");
18
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220 // store in context
72
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221 sc.setAttribute(GRAPHDBSRV_KEY, srv);
18
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222 srv.start();
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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223 } else {
75
25eb2e1df106 change logging to java.util.logging.
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224 logger.severe("Unable to get resource " + dbFn);
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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225 }
22
b1fb0d117877 adding and listing groups via html works now.
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diff changeset
226 } else {
b1fb0d117877 adding and listing groups via html works now.
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diff changeset
227 // get existing AnnotationStore
72
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228 store = (AnnotationStore) sc.getAttribute(ANNSTORE_KEY);
18
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229 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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230 /*
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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231 * read consumerKeys from webapp
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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232 */
72
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233 consumerKeys = (Properties) sc.getAttribute(CONSUMERKEYS_KEY);
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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234 if (consumerKeys == null) {
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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235 consumerKeys = new Properties();
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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236 InputStream ps = getResourceAsStream(sc, CONSUMER_KEYS_PATH);
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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237 if (ps != null) {
75
25eb2e1df106 change logging to java.util.logging.
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238 logger.fine("loading consumer keys from " + CONSUMER_KEYS_PATH);
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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239 try {
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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240 consumerKeys.load(ps);
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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241 } catch (IOException e) {
89
247cbbb385de improved logging.
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242 logger.fine("Error loading consumer keys: "+e);
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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243 }
75
25eb2e1df106 change logging to java.util.logging.
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244 logger.fine("consumer keys: " + consumerKeys);
18
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245 } else {
75
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246 logger.severe("Unable to get resource " + CONSUMER_KEYS_PATH);
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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247 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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248 // store config
72
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249 sc.setAttribute(CONSUMERKEYS_KEY, consumerKeys);
18
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250 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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251 } else {
75
25eb2e1df106 change logging to java.util.logging.
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252 logger.severe("Unable to get ServletContext!");
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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253 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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254 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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255
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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256 public abstract String getVersion();
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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257
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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258 /**
57
4efb21cf0ce0 new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
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259 * @return the authorizationMode
4efb21cf0ce0 new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
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260 */
4efb21cf0ce0 new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
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261 public boolean isAuthorizationMode() {
4efb21cf0ce0 new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
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262 return authorizationMode;
4efb21cf0ce0 new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
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263 }
4efb21cf0ce0 new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
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264
4efb21cf0ce0 new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
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diff changeset
265 /**
19
f0f55ab768c9 more work on HTML UI.
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266 * @return the store
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267 */
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268 public AnnotationStore getAnnotationStore() {
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269 return store;
f0f55ab768c9 more work on HTML UI.
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270 }
f0f55ab768c9 more work on HTML UI.
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diff changeset
271
f0f55ab768c9 more work on HTML UI.
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diff changeset
272 /**
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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273 * returns consumer secret for consumer key. returns null if consumer key
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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274 * doesn't exist.
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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275 *
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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276 * @param consumerKey
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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277 * @return
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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278 */
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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279 public String getConsumerSecret(String consumerKey) {
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280 return consumerKeys.getProperty(consumerKey);
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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281 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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282
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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283 /**
86
e3f0613b2f2d renamed getFullname to make it configurable.
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diff changeset
284 * Return the full name (String) of the person with the given user-id.
e3f0613b2f2d renamed getFullname to make it configurable.
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285 *
e3f0613b2f2d renamed getFullname to make it configurable.
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286 * Contacts a naming service (currently LDAP).
e3f0613b2f2d renamed getFullname to make it configurable.
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287 *
e3f0613b2f2d renamed getFullname to make it configurable.
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288 * @param userId
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289 * @return full-name
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290 */
e3f0613b2f2d renamed getFullname to make it configurable.
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diff changeset
291 public String getFullNameForId(String userId) {
e3f0613b2f2d renamed getFullname to make it configurable.
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292 return getFullNameFromLdap(userId);
e3f0613b2f2d renamed getFullname to make it configurable.
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293 }
e3f0613b2f2d renamed getFullname to make it configurable.
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294
e3f0613b2f2d renamed getFullname to make it configurable.
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diff changeset
295 /**
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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296 * Hole den vollen Benutzernamen aus dem LDAP
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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297 *
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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298 * @param creator
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299 * @return
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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300 */
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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301 public String getFullNameFromLdap(String creator) {
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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302 String retString = creator; // falls nichts gefunden wird einfach den
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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303 // creator zurueckgeben
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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304 if (ldapServerUrl == null) {
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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305 return retString;
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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306 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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307 Hashtable<String, String> env = new Hashtable<String, String>();
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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308 String sp = "com.sun.jndi.ldap.LdapCtxFactory";
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309 env.put(javax.naming.Context.INITIAL_CONTEXT_FACTORY, sp);
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310 env.put(javax.naming.Context.PROVIDER_URL, ldapServerUrl);
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311
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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312 DirContext dctx;
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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313 try {
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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314 dctx = new InitialDirContext(env);
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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315 } catch (NamingException e) {
75
25eb2e1df106 change logging to java.util.logging.
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316 logger.warning("Error in getFullNameFromLDAP! "+e);
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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317 return retString;
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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318 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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319
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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320 String base = "ou=people";
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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321
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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322 SearchControls sc = new SearchControls();
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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323 String[] attributeFilter = { "cn", "mail" };
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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324 sc.setReturningAttributes(attributeFilter);
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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325 sc.setSearchScope(SearchControls.SUBTREE_SCOPE);
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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326
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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327 String filter = "(uid=" + creator + ")";
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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parents:
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328
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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329 try {
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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330 NamingEnumeration<SearchResult> results = dctx.search(base, filter, sc);
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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331 while (results.hasMore()) {
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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parents:
diff changeset
332 SearchResult sr = (SearchResult) results.next();
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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parents:
diff changeset
333 javax.naming.directory.Attributes attrs = sr.getAttributes();
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
casties
parents:
diff changeset
334
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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diff changeset
335 Attribute attr = attrs.get("cn");
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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diff changeset
336 retString = (String) attr.get();
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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diff changeset
337 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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338 } catch (NamingException e) {
75
25eb2e1df106 change logging to java.util.logging.
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diff changeset
339 logger.warning("Error in getFullNameFromLDAP!"+e);
18
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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340 }
aafa3884b2c4 new AnnotationStore restlet for HTML-UI.
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parents:
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341
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342 try {
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343 dctx.close();
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344 } catch (NamingException e) {
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345 logger.warning("Error in getFullNameFromLDAP!"+e);
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346 }
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347 return retString;
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348 }
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349
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350 /**
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351 * returns resource from path as InputStream.
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352 *
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353 * Tries path in webapp first, then uses classpath loader.
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354 * Relative paths in webapp start in /WEB-INF/.
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355 *
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356 * @param sc
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357 * @param path
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358 * @return
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359 */
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360 protected InputStream getResourceAsStream(ServletContext sc, String path) {
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361 InputStream ps = null;
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362 if (sc == null) {
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363 // no servlet context -> use class loader
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364 ps = Thread.currentThread().getContextClassLoader().getResourceAsStream(path);
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365 } else {
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366 // try path in webapp first
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367 String webPath = path;
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368 if (!webPath.startsWith("/")) {
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369 // relative path in webapp starts in WEB-INF
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370 webPath = "/WEB-INF/" + webPath;
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371 }
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372 ps = sc.getResourceAsStream(webPath);
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373 if (ps == null) {
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374 // try as file
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375 File pf = new File(sc.getRealPath(webPath));
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376 if (pf.canRead()) {
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377 logger.fine("trying file for: " + pf);
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378 try {
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379 ps = new FileInputStream(pf);
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380 } catch (FileNotFoundException e) {
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381 logger.severe(e.toString());
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382 }
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383 } else {
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384 // use class loader
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385 ps = Thread.currentThread().getContextClassLoader().getResourceAsStream(path);
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386 }
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387 }
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388 }
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389 return ps;
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390 }
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391
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392 /**
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393 * get a real file name for a web app file pathname.
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394 *
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395 * If filename starts with "/" its treated as absolute else the path is
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396 * appended to the /WEB-INF/ directory in the web-app.
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397 *
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398 * @param filename
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399 * @param sc
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400 * @return
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401 */
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402 public static String getResourcePath(ServletContext sc, String filename) {
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403 File f = new File(filename);
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404 // is the filename absolute?
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405 if (!f.isAbsolute() && sc != null) {
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406 // relative path -> use getRealPath to resolve in webapp
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407 filename = sc.getRealPath("/WEB-INF/" + filename);
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408 }
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409 return filename;
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410 }
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411
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412 /*
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413 * (non-Javadoc)
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414 *
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415 * @see org.restlet.Application#stop()
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416 */
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417 @Override
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418 public synchronized void stop() throws Exception {
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419 /*
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420 * trying to clean up databases, not sure if this is the right way...
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421 */
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422 if (srv != null) {
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423 logger.info("Stopping DB admin server...");
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424 srv.stop();
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425 srv = null;
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426 }
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427 if (graphDb != null) {
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428 logger.info("Stopping DB...");
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429 graphDb.shutdown();
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430 graphDb = null;
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431 }
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432 super.stop();
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433 }
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434
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435 private static void registerShutdownHook(final GraphDatabaseService graphDb) {
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436 // Registers a shutdown hook for the Neo4j instance so that it
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437 // shuts down nicely when the VM exits (even if you "Ctrl-C" the
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438 // running example before it's completed)
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439 Runtime.getRuntime().addShutdownHook(new Thread() {
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440 @Override
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441 public void run() {
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442 graphDb.shutdown();
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443 }
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444 });
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445 }
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446
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447 }