Mercurial > hg > AnnotationManagerN4J
annotate src/main/java/de/mpiwg/itgroup/annotations/restlet/AnnotatorResourceImpl.java @ 76:4e2dc67997a0
save text quote from Annotator.
| author | casties |
|---|---|
| date | Fri, 06 Jun 2014 09:26:21 +0200 |
| parents | 25eb2e1df106 |
| children | 6bf38b5e30a8 |
| rev | line source |
|---|---|
| 3 | 1 /** |
| 2 * Base class for Annotator resource classes. | |
| 3 */ | |
| 4 package de.mpiwg.itgroup.annotations.restlet; | |
| 5 | |
| 70 | 6 /* |
| 7 * #%L | |
| 8 * AnnotationManager | |
| 9 * %% | |
| 10 * Copyright (C) 2012 - 2014 MPIWG Berlin | |
| 11 * %% | |
| 12 * This program is free software: you can redistribute it and/or modify | |
| 13 * it under the terms of the GNU Lesser General Public License as | |
| 14 * published by the Free Software Foundation, either version 3 of the | |
| 15 * License, or (at your option) any later version. | |
| 16 * | |
| 17 * This program is distributed in the hope that it will be useful, | |
| 18 * but WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 19 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
| 20 * GNU General Lesser Public License for more details. | |
| 21 * | |
| 22 * You should have received a copy of the GNU General Lesser Public | |
| 23 * License along with this program. If not, see | |
| 24 * <http://www.gnu.org/licenses/lgpl-3.0.html>. | |
| 25 * #L% | |
| 26 */ | |
| 27 | |
| 3 | 28 import java.io.UnsupportedEncodingException; |
| 29 import java.security.InvalidKeyException; | |
| 30 import java.security.SignatureException; | |
| 5 | 31 import java.text.SimpleDateFormat; |
| 3 | 32 import java.util.ArrayList; |
| 5 | 33 import java.util.Calendar; |
| 16 | 34 import java.util.HashSet; |
| 3 | 35 import java.util.List; |
| 16 | 36 import java.util.Set; |
| 75 | 37 import java.util.logging.Logger; |
| 3 | 38 import java.util.regex.Matcher; |
| 39 import java.util.regex.Pattern; | |
| 40 | |
| 41 import net.oauth.jsontoken.Checker; | |
| 42 import net.oauth.jsontoken.JsonToken; | |
| 43 import net.oauth.jsontoken.JsonTokenParser; | |
| 44 import net.oauth.jsontoken.SystemClock; | |
| 45 import net.oauth.jsontoken.crypto.HmacSHA256Verifier; | |
| 46 import net.oauth.jsontoken.crypto.Verifier; | |
| 47 | |
| 48 import org.apache.commons.codec.binary.Base64; | |
| 49 import org.json.JSONArray; | |
| 50 import org.json.JSONException; | |
| 51 import org.json.JSONObject; | |
| 52 import org.restlet.data.Status; | |
|
72
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
53 import org.restlet.engine.header.Header; |
| 3 | 54 import org.restlet.representation.Representation; |
| 55 import org.restlet.resource.Options; | |
| 56 import org.restlet.resource.ServerResource; | |
|
72
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
57 import org.restlet.util.Series; |
| 3 | 58 |
| 9 | 59 import de.mpiwg.itgroup.annotations.Actor; |
| 4 | 60 import de.mpiwg.itgroup.annotations.Annotation; |
| 61 import de.mpiwg.itgroup.annotations.Annotation.FragmentTypes; | |
| 10 | 62 import de.mpiwg.itgroup.annotations.Group; |
| 63 import de.mpiwg.itgroup.annotations.Person; | |
|
48
0e00bf8e27fb
targets and resources of Annotation object are objects now.
casties
parents:
40
diff
changeset
|
64 import de.mpiwg.itgroup.annotations.Resource; |
|
0e00bf8e27fb
targets and resources of Annotation object are objects now.
casties
parents:
40
diff
changeset
|
65 import de.mpiwg.itgroup.annotations.Target; |
| 4 | 66 import de.mpiwg.itgroup.annotations.neo4j.AnnotationStore; |
| 3 | 67 |
| 68 /** | |
| 69 * Base class for Annotator resource classes. | |
| 70 * | |
| 71 * @author dwinter, casties | |
| 72 * | |
| 73 */ | |
| 74 public abstract class AnnotatorResourceImpl extends ServerResource { | |
| 75 | |
| 75 | 76 protected static Logger logger = Logger.getLogger(AnnotatorResourceImpl.class.toString()); |
| 4 | 77 |
| 78 private AnnotationStore store; | |
| 3 | 79 |
| 80 protected String getAllowedMethodsForHeader() { | |
| 81 return "OPTIONS,GET,POST"; | |
| 82 } | |
| 83 | |
| 4 | 84 protected AnnotationStore getAnnotationStore() { |
| 85 if (store == null) { | |
| 19 | 86 store = ((BaseRestlet) getApplication()).getAnnotationStore(); |
| 4 | 87 } |
| 88 return store; | |
| 89 } | |
| 90 | |
| 3 | 91 public String encodeJsonId(String id) { |
| 64 | 92 if (id == null) |
| 93 return null; | |
| 3 | 94 try { |
| 95 return Base64.encodeBase64URLSafeString(id.getBytes("UTF-8")); | |
| 96 } catch (UnsupportedEncodingException e) { | |
| 97 return null; | |
| 98 } | |
| 99 } | |
| 100 | |
| 101 public String decodeJsonId(String id) { | |
| 64 | 102 if (id == null) |
| 103 return null; | |
| 3 | 104 try { |
| 105 return new String(Base64.decodeBase64(id), "UTF-8"); | |
| 106 } catch (UnsupportedEncodingException e) { | |
| 107 return null; | |
| 108 } | |
| 109 } | |
| 110 | |
| 111 /** | |
| 112 * Handle options request to allow CORS for AJAX. | |
| 113 * | |
| 114 * @param entity | |
| 115 */ | |
| 116 @Options | |
| 117 public void doOptions(Representation entity) { | |
| 75 | 118 logger.fine("AnnotatorResourceImpl doOptions!"); |
| 3 | 119 setCorsHeaders(); |
| 120 } | |
| 121 | |
| 122 /** | |
| 123 * set headers to allow CORS for AJAX. | |
| 124 */ | |
| 125 protected void setCorsHeaders() { | |
|
72
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
126 @SuppressWarnings("unchecked") |
|
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
127 Series<Header> responseHeaders = (Series<Header>) getResponse().getAttributes().get("org.restlet.http.headers"); |
| 3 | 128 if (responseHeaders == null) { |
|
72
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
129 responseHeaders = new Series<Header>(Header.class); |
| 3 | 130 getResponse().getAttributes().put("org.restlet.http.headers", responseHeaders); |
| 131 } | |
| 132 responseHeaders.add("Access-Control-Allow-Methods", getAllowedMethodsForHeader()); | |
| 133 // echo back Origin and Request-Headers | |
|
72
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
134 @SuppressWarnings("unchecked") |
|
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
135 Series<Header> requestHeaders = (Series<Header>) getRequest().getAttributes().get("org.restlet.http.headers"); |
| 3 | 136 String origin = requestHeaders.getFirstValue("Origin", true); |
| 137 if (origin == null) { | |
| 138 responseHeaders.add("Access-Control-Allow-Origin", "*"); | |
| 139 } else { | |
| 140 responseHeaders.add("Access-Control-Allow-Origin", origin); | |
| 141 } | |
| 142 String allowHeaders = requestHeaders.getFirstValue("Access-Control-Request-Headers", true); | |
| 143 if (allowHeaders != null) { | |
| 144 responseHeaders.add("Access-Control-Allow-Headers", allowHeaders); | |
| 145 } | |
| 146 responseHeaders.add("Access-Control-Allow-Credentials", "true"); | |
| 147 responseHeaders.add("Access-Control-Max-Age", "60"); | |
| 148 } | |
| 149 | |
| 150 /** | |
| 151 * returns if authentication information from headers is valid. | |
| 152 * | |
| 153 * @param entity | |
| 154 * @return | |
| 155 */ | |
| 156 public boolean isAuthenticated(Representation entity) { | |
| 157 return (checkAuthToken(entity) != null); | |
| 158 } | |
| 159 | |
| 160 /** | |
|
57
4efb21cf0ce0
new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
casties
parents:
52
diff
changeset
|
161 * Checks Annotator Auth plugin authentication information from headers. |
| 61 | 162 * Returns userId if successful. Returns "anonymous" in non-authorization |
| 163 * mode. | |
| 3 | 164 * |
| 165 * @param entity | |
| 166 * @return | |
| 167 */ | |
| 168 public String checkAuthToken(Representation entity) { | |
|
72
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
169 @SuppressWarnings("unchecked") |
|
4c2cea836bc0
restlet 2.1 works now. (it's the start() method, stupid!)
casties
parents:
70
diff
changeset
|
170 Series<Header> requestHeaders = (Series<Header>) getRequest().getAttributes().get("org.restlet.http.headers"); |
| 3 | 171 String authToken = requestHeaders.getFirstValue("x-annotator-auth-token", true); |
|
57
4efb21cf0ce0
new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
casties
parents:
52
diff
changeset
|
172 if (authToken == null) { |
|
4efb21cf0ce0
new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
casties
parents:
52
diff
changeset
|
173 if (!((BaseRestlet) getApplication()).isAuthorizationMode()) { |
|
4efb21cf0ce0
new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
casties
parents:
52
diff
changeset
|
174 return "anonymous"; |
|
4efb21cf0ce0
new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
casties
parents:
52
diff
changeset
|
175 } |
|
4efb21cf0ce0
new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
casties
parents:
52
diff
changeset
|
176 return null; |
|
4efb21cf0ce0
new non-authorized mode without tokens. enabled by default. configured with annotationmanager.authorization=false property.
casties
parents:
52
diff
changeset
|
177 } |
| 3 | 178 // decode token first to get consumer key |
| 179 JsonToken token = new JsonTokenParser(null, null).deserialize(authToken); | |
| 180 String userId = token.getParamAsPrimitive("userId").getAsString(); | |
| 181 String consumerKey = token.getParamAsPrimitive("consumerKey").getAsString(); | |
| 182 // get stored consumer secret for key | |
| 18 | 183 BaseRestlet restServer = (BaseRestlet) getApplication(); |
| 3 | 184 String consumerSecret = restServer.getConsumerSecret(consumerKey); |
| 75 | 185 logger.fine("requested consumer key=" + consumerKey + " secret=" + consumerSecret); |
| 3 | 186 if (consumerSecret == null) { |
| 187 return null; | |
| 188 } | |
| 75 | 189 // logger.fine(String.format("token=%s tokenString=%s signatureAlgorithm=%s",token,token.getTokenString(),token.getSignatureAlgorithm())); |
| 3 | 190 try { |
| 191 List<Verifier> verifiers = new ArrayList<Verifier>(); | |
| 192 // we only do HS256 yet | |
| 193 verifiers.add(new HmacSHA256Verifier(consumerSecret.getBytes("UTF-8"))); | |
| 194 // verify token signature(should really be static...) | |
| 195 new JsonTokenParser(new SystemClock(), null, (Checker[]) null).verify(token, verifiers); | |
| 196 } catch (SignatureException e) { | |
| 197 // TODO Auto-generated catch block | |
| 198 e.printStackTrace(); | |
| 199 } catch (InvalidKeyException e) { | |
| 200 // TODO Auto-generated catch block | |
| 201 e.printStackTrace(); | |
| 202 } catch (UnsupportedEncodingException e) { | |
| 203 // TODO Auto-generated catch block | |
| 204 e.printStackTrace(); | |
| 205 } | |
| 206 // must be ok then | |
| 75 | 207 logger.fine("auth OK! user=" + userId); |
| 3 | 208 return userId; |
| 209 } | |
| 210 | |
| 211 /** | |
| 212 * creates Annotator-JSON from an Annotation object. | |
| 213 * | |
| 214 * @param annot | |
| 61 | 215 * @param forAnonymous |
| 216 * TODO | |
| 3 | 217 * @return |
| 218 */ | |
|
14
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
219 public JSONObject createAnnotatorJson(Annotation annot, boolean forAnonymous) { |
| 5 | 220 // return user as a JSON object (otherwise just as string) |
| 3 | 221 boolean makeUserObject = true; |
| 222 JSONObject jo = new JSONObject(); | |
| 223 try { | |
| 4 | 224 jo.put("text", annot.getBodyText()); |
| 225 jo.put("uri", annot.getTargetBaseUri()); | |
|
40
03e0f7574224
saving and loading resource targets should work now (no searching yet)
casties
parents:
22
diff
changeset
|
226 if (annot.getResourceUri() != null) { |
|
03e0f7574224
saving and loading resource targets should work now (no searching yet)
casties
parents:
22
diff
changeset
|
227 jo.put("resource", annot.getResourceUri()); |
|
03e0f7574224
saving and loading resource targets should work now (no searching yet)
casties
parents:
22
diff
changeset
|
228 } |
| 76 | 229 if (annot.getQuote() != null) { |
| 230 jo.put("quote", annot.getQuote()); | |
| 231 } | |
| 3 | 232 |
| 16 | 233 /* |
| 234 * user | |
| 235 */ | |
| 64 | 236 Actor creator = annot.getCreator(); |
| 237 if (creator != null) { | |
| 238 if (makeUserObject) { | |
| 239 // create user object | |
| 240 JSONObject userObject = new JSONObject(); | |
| 241 // save creator as uri | |
| 242 userObject.put("uri", creator.getUri()); | |
| 243 // make short user id | |
| 244 String userId = creator.getIdString(); | |
| 245 // set as id | |
| 246 userObject.put("id", userId); | |
| 247 // get full name | |
| 248 String userName = creator.getName(); | |
| 249 if (userName == null) { | |
| 250 BaseRestlet restServer = (BaseRestlet) getApplication(); | |
| 251 userName = restServer.getFullNameFromLdap(userId); | |
| 252 } | |
| 253 userObject.put("name", userName); | |
| 254 // save user object | |
| 255 jo.put("user", userObject); | |
| 256 } else { | |
| 257 // save user as string | |
| 258 jo.put("user", annot.getCreatorUri()); | |
| 5 | 259 } |
| 3 | 260 } |
| 261 | |
| 16 | 262 /* |
| 263 * ranges | |
| 264 */ | |
| 4 | 265 if (annot.getTargetFragment() != null) { |
| 3 | 266 // we only look at the first xpointer |
| 4 | 267 List<String> fragments = new ArrayList<String>(); |
| 268 fragments.add(annot.getTargetFragment()); | |
| 269 FragmentTypes xt = annot.getFragmentType(); | |
| 270 if (xt == FragmentTypes.XPOINTER) { | |
| 271 jo.put("ranges", transformToRanges(fragments)); | |
| 272 } else if (xt == FragmentTypes.AREA) { | |
| 61 | 273 jo.put("shapes", transformToShapes(fragments)); |
| 3 | 274 } |
| 275 } | |
| 61 | 276 |
| 16 | 277 /* |
| 278 * permissions | |
| 279 */ | |
| 10 | 280 JSONObject perms = new JSONObject(); |
| 281 jo.put("permissions", perms); | |
| 282 // admin | |
| 283 JSONArray adminPerms = new JSONArray(); | |
| 284 perms.put("admin", adminPerms); | |
| 285 Actor adminPerm = annot.getAdminPermission(); | |
| 286 if (adminPerm != null) { | |
| 287 adminPerms.put(adminPerm.getIdString()); | |
|
14
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
288 } else if (forAnonymous) { |
|
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
289 // set something because its not allowed for anonymous |
|
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
290 adminPerms.put("not-you"); |
| 10 | 291 } |
| 292 // delete | |
| 293 JSONArray deletePerms = new JSONArray(); | |
| 294 perms.put("delete", deletePerms); | |
| 295 Actor deletePerm = annot.getDeletePermission(); | |
| 296 if (deletePerm != null) { | |
| 297 deletePerms.put(deletePerm.getIdString()); | |
|
14
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
298 } else if (forAnonymous) { |
|
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
299 // set something because its not allowed for anonymous |
|
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
300 deletePerms.put("not-you"); |
| 10 | 301 } |
| 302 // update | |
| 303 JSONArray updatePerms = new JSONArray(); | |
| 304 perms.put("update", updatePerms); | |
| 305 Actor updatePerm = annot.getUpdatePermission(); | |
| 306 if (updatePerm != null) { | |
| 307 updatePerms.put(updatePerm.getIdString()); | |
|
14
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
308 } else if (forAnonymous) { |
|
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
309 // set something because its not allowed for anonymous |
|
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
10
diff
changeset
|
310 updatePerms.put("not-you"); |
| 10 | 311 } |
| 312 // read | |
| 313 JSONArray readPerms = new JSONArray(); | |
| 314 perms.put("read", readPerms); | |
| 315 Actor readPerm = annot.getReadPermission(); | |
| 316 if (readPerm != null) { | |
| 317 readPerms.put(readPerm.getIdString()); | |
| 318 } | |
| 61 | 319 |
| 16 | 320 /* |
| 321 * tags | |
| 322 */ | |
| 61 | 323 Set<String> tagset = annot.getTags(); |
| 16 | 324 if (tagset != null) { |
| 325 JSONArray tags = new JSONArray(); | |
| 326 jo.put("tags", tags); | |
| 327 for (String tag : tagset) { | |
| 328 tags.put(tag); | |
| 329 } | |
| 330 } | |
| 61 | 331 |
| 16 | 332 /* |
| 333 * id | |
| 334 */ | |
| 3 | 335 // encode Annotation URL (=id) in base64 |
| 4 | 336 String annotUrl = annot.getUri(); |
| 3 | 337 String annotId = encodeJsonId(annotUrl); |
| 338 jo.put("id", annotId); | |
| 339 return jo; | |
| 340 } catch (JSONException e) { | |
| 75 | 341 logger.severe("Unable to create AnnotatorJSON! "+e); |
| 3 | 342 } |
| 343 return null; | |
| 344 } | |
| 345 | |
| 346 private JSONArray transformToRanges(List<String> xpointers) { | |
| 347 JSONArray ja = new JSONArray(); | |
| 348 Pattern rg = Pattern | |
| 4 | 349 .compile("xpointer\\(start-point\\(string-range\\(\"([^\"]*)\",([^,]*),1\\)\\)/range-to\\(end-point\\(string-range\\(\"([^\"]*)\",([^,]*),1\\)\\)\\)\\)"); |
| 350 Pattern rg1 = Pattern.compile("xpointer\\(start-point\\(string-range\\(\"([^\"]*)\",([^,]*),1\\)\\)\\)"); | |
| 3 | 351 try { |
| 352 for (String xpointer : xpointers) { | |
| 10 | 353 // String decoded = URLDecoder.decode(xpointer, "utf-8"); |
| 5 | 354 String decoded = xpointer; |
| 3 | 355 Matcher m = rg.matcher(decoded); |
| 356 if (m.find()) { | |
| 61 | 357 JSONObject jo = new JSONObject(); |
| 358 jo.put("start", m.group(1)); | |
| 359 jo.put("startOffset", m.group(2)); | |
| 360 jo.put("end", m.group(3)); | |
| 361 jo.put("endOffset", m.group(4)); | |
| 362 ja.put(jo); | |
| 3 | 363 } |
| 364 m = rg1.matcher(xpointer); | |
| 365 if (m.find()) { | |
| 366 JSONObject jo = new JSONObject(); | |
| 367 jo.put("start", m.group(1)); | |
| 368 jo.put("startOffset", m.group(2)); | |
| 369 ja.put(jo); | |
| 370 } | |
| 371 } | |
| 372 } catch (JSONException e) { | |
| 75 | 373 logger.severe("Unable to transform to ranges! "+e); |
| 3 | 374 } |
| 375 return ja; | |
| 376 } | |
| 377 | |
| 61 | 378 private JSONArray transformToShapes(List<String> xpointers) { |
| 3 | 379 JSONArray ja = new JSONArray(); |
| 61 | 380 Pattern rg = Pattern.compile("xywh=(\\w*):([\\d\\.]+),([\\d\\.]+),([\\d\\.]+),([\\d\\.]+)"); |
| 3 | 381 try { |
| 382 for (String xpointer : xpointers) { | |
| 5 | 383 String decoded = xpointer; |
| 3 | 384 Matcher m = rg.matcher(decoded); |
| 385 if (m.find()) { | |
| 61 | 386 String units = m.group(1); |
| 387 float x = getFloat(m.group(2)); | |
| 388 float y = getFloat(m.group(3)); | |
| 389 float width = getFloat(m.group(4)); | |
| 390 float height = getFloat(m.group(5)); | |
| 391 JSONObject shape = new JSONObject(); | |
| 392 JSONObject geom = new JSONObject(); | |
| 393 geom.put("units", units); | |
| 394 geom.put("x", x); | |
| 395 geom.put("y", y); | |
| 396 if (width == 0 || height == 0) { | |
| 397 shape.put("type", "point"); | |
| 398 shape.put("geometry", geom); | |
| 399 } else { | |
| 400 shape.put("type", "rectangle"); | |
| 401 geom.put("width", width); | |
| 402 geom.put("height", height); | |
| 403 shape.put("geometry", geom); | |
| 3 | 404 } |
| 61 | 405 ja.put(shape); |
| 3 | 406 } |
| 407 } | |
| 408 } catch (JSONException e) { | |
| 75 | 409 logger.severe("Unable to transform to shapes! "+e); |
| 3 | 410 } |
| 411 return ja; | |
| 412 } | |
| 413 | |
| 61 | 414 protected String parseShape(JSONObject shape) throws JSONException { |
| 415 String fragment = null; | |
| 416 String type = shape.getString("type"); | |
| 417 JSONObject geom = shape.getJSONObject("geometry"); | |
| 418 if (type.equalsIgnoreCase("point")) { | |
| 419 String x = geom.getString("x"); | |
| 420 String y = geom.getString("y"); | |
| 421 fragment = String.format("xywh=fraction:%s,%s,0,0", x, y); | |
|
63
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
422 } else if (type.equalsIgnoreCase("rectangle")) { |
| 61 | 423 String x = geom.getString("x"); |
| 424 String y = geom.getString("y"); | |
|
63
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
425 String width = geom.getString("width"); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
426 String height = geom.getString("height"); |
| 61 | 427 fragment = String.format("xywh=fraction:%s,%s,%s,%s", x, y, width, height); |
| 428 } else { | |
| 75 | 429 logger.severe("Unable to parse this shape: " + shape); |
| 61 | 430 } |
| 431 return fragment; | |
| 432 } | |
| 433 | |
| 5 | 434 protected String parseArea(JSONObject area) throws JSONException { |
| 4 | 435 String x = area.getString("x"); |
| 436 String y = area.getString("y"); | |
| 437 String width = "0"; | |
| 438 String height = "0"; | |
| 439 if (area.has("width")) { | |
| 440 width = area.getString("width"); | |
| 441 height = area.getString("height"); | |
| 442 } | |
| 5 | 443 String fragment = String.format("xywh=fraction:%s,%s,%s,%s", x, y, width, height); |
| 4 | 444 return fragment; |
| 445 } | |
| 446 | |
| 5 | 447 protected String parseRange(JSONObject range) throws JSONException { |
| 4 | 448 String start = range.getString("start"); |
| 449 String end = range.getString("end"); | |
| 450 String startOffset = range.getString("startOffset"); | |
| 451 String endOffset = range.getString("endOffset"); | |
| 5 | 452 String fragment = String.format( |
| 4 | 453 "xpointer(start-point(string-range(\"%s\",%s,1))/range-to(end-point(string-range(\"%s\",%s,1))))", start, |
| 5 | 454 startOffset, end, endOffset); |
| 4 | 455 return fragment; |
| 456 } | |
| 457 | |
| 3 | 458 /** |
| 5 | 459 * Creates an Annotation object with data from JSON. |
| 3 | 460 * |
| 4 | 461 * uses the specification from the annotator project: {@link https |
| 462 * ://github.com/okfn/annotator/wiki/Annotation-format} | |
| 3 | 463 * |
| 4 | 464 * The username will be transformed to an URI if not given already as URI, |
| 465 * if not it will set to the MPIWG namespace defined in | |
| 3 | 466 * de.mpiwg.itgroup.annotationManager.Constants.NS |
| 467 * | |
| 468 * @param jo | |
| 469 * @return | |
| 470 * @throws JSONException | |
| 4 | 471 * @throws UnsupportedEncodingException |
| 3 | 472 */ |
| 4 | 473 public Annotation createAnnotation(JSONObject jo, Representation entity) throws JSONException, UnsupportedEncodingException { |
| 3 | 474 return updateAnnotation(new Annotation(), jo, entity); |
| 475 } | |
| 476 | |
| 5 | 477 /** |
| 478 * Updates an Annotation object with data from JSON. | |
| 479 * | |
| 480 * uses the specification from the annotator project: {@link https | |
| 481 * ://github.com/okfn/annotator/wiki/Annotation-format} | |
| 482 * | |
| 483 * The username will be transformed to an URI if not given already as URI, | |
| 484 * if not it will set to the MPIWG namespace defined in | |
| 485 * de.mpiwg.itgroup.annotationManager.Constants.NS | |
| 486 * | |
| 487 * @param annot | |
| 488 * @param jo | |
| 489 * @return | |
| 490 * @throws JSONException | |
| 491 * @throws UnsupportedEncodingException | |
| 492 */ | |
| 4 | 493 public Annotation updateAnnotation(Annotation annot, JSONObject jo, Representation entity) throws JSONException, |
| 494 UnsupportedEncodingException { | |
| 16 | 495 /* |
| 496 * target uri | |
| 497 */ | |
| 3 | 498 if (jo.has("uri")) { |
|
48
0e00bf8e27fb
targets and resources of Annotation object are objects now.
casties
parents:
40
diff
changeset
|
499 annot.setTarget(new Target(jo.getString("uri"))); |
| 3 | 500 } |
| 16 | 501 /* |
|
40
03e0f7574224
saving and loading resource targets should work now (no searching yet)
casties
parents:
22
diff
changeset
|
502 * resource uri |
|
03e0f7574224
saving and loading resource targets should work now (no searching yet)
casties
parents:
22
diff
changeset
|
503 */ |
|
03e0f7574224
saving and loading resource targets should work now (no searching yet)
casties
parents:
22
diff
changeset
|
504 if (jo.has("resource")) { |
|
48
0e00bf8e27fb
targets and resources of Annotation object are objects now.
casties
parents:
40
diff
changeset
|
505 annot.setResource(new Resource(jo.getString("resource"))); |
|
40
03e0f7574224
saving and loading resource targets should work now (no searching yet)
casties
parents:
22
diff
changeset
|
506 } |
|
03e0f7574224
saving and loading resource targets should work now (no searching yet)
casties
parents:
22
diff
changeset
|
507 /* |
| 16 | 508 * annotation text |
| 509 */ | |
| 3 | 510 if (jo.has("text")) { |
| 4 | 511 annot.setBodyText(jo.getString("text")); |
| 3 | 512 } |
| 16 | 513 /* |
| 76 | 514 * annotation quote |
| 515 */ | |
| 516 if (jo.has("quote")) { | |
| 517 annot.setQuote(jo.getString("quote")); | |
| 518 } | |
| 519 /* | |
| 16 | 520 * check authentication |
| 521 */ | |
| 3 | 522 String authUser = checkAuthToken(entity); |
| 523 if (authUser == null) { | |
| 4 | 524 /* |
| 525 * // try http auth User httpUser = getHttpAuthUser(entity); if | |
| 526 * (httpUser == null) { | |
| 527 */ | |
| 528 setStatus(Status.CLIENT_ERROR_FORBIDDEN); | |
| 529 return null; | |
| 530 /* | |
| 531 * } authUser = httpUser.getIdentifier(); | |
| 532 */ | |
| 3 | 533 } |
| 16 | 534 /* |
| 535 * get or create creator object | |
| 536 */ | |
| 9 | 537 Actor creator = annot.getCreator(); |
| 538 if (creator == null) { | |
| 10 | 539 creator = new Person(); |
| 9 | 540 annot.setCreator(creator); |
| 541 } | |
| 3 | 542 // username not required, if no username given authuser will be used |
| 543 String username = null; | |
| 10 | 544 String userUri = creator.getUri(); |
| 3 | 545 if (jo.has("user")) { |
| 546 if (jo.get("user") instanceof String) { | |
| 547 // user is just a String | |
| 548 username = jo.getString("user"); | |
| 10 | 549 creator.setId(username); |
| 3 | 550 // TODO: what if username and authUser are different? |
| 551 } else { | |
| 552 // user is an object | |
| 553 JSONObject user = jo.getJSONObject("user"); | |
| 554 if (user.has("id")) { | |
| 10 | 555 String id = user.getString("id"); |
| 556 creator.setId(id); | |
| 557 username = id; | |
| 3 | 558 } |
| 559 if (user.has("uri")) { | |
| 560 userUri = user.getString("uri"); | |
| 561 } | |
| 562 } | |
| 563 } | |
| 564 if (username == null) { | |
| 565 username = authUser; | |
| 566 } | |
| 5 | 567 // try to get full name |
| 9 | 568 if (creator.getName() == null && username != null) { |
| 18 | 569 BaseRestlet restServer = (BaseRestlet) getApplication(); |
| 5 | 570 String fullName = restServer.getFullNameFromLdap(username); |
| 9 | 571 creator.setName(fullName); |
| 5 | 572 } |
| 573 // userUri should be a URI, if not it will set to the MPIWG namespace | |
| 3 | 574 if (userUri == null) { |
| 575 if (username.startsWith("http")) { | |
| 576 userUri = username; | |
| 577 } else { | |
| 58 | 578 userUri = BaseRestlet.PERSONS_URI_PREFIX + username; |
| 3 | 579 } |
| 580 } | |
| 581 // TODO: should we overwrite the creator? | |
| 9 | 582 if (creator.getUri() == null) { |
| 583 creator.setUri(userUri); | |
| 5 | 584 } |
| 16 | 585 /* |
| 586 * creation date | |
| 587 */ | |
| 5 | 588 if (annot.getCreated() == null) { |
| 589 // set creation date | |
| 590 SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss'Z'"); | |
| 591 String ct = format.format(Calendar.getInstance().getTime()); | |
| 592 annot.setCreated(ct); | |
| 593 } | |
| 3 | 594 |
| 16 | 595 /* |
| 61 | 596 * create fragment from the first range/area |
| 16 | 597 */ |
| 52 | 598 try { |
| 599 if (jo.has("ranges")) { | |
|
63
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
600 JSONArray ranges = jo.getJSONArray("ranges"); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
601 if (ranges.length() > 0) { |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
602 JSONObject range = ranges.getJSONObject(0); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
603 annot.setFragmentType(FragmentTypes.XPOINTER); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
604 String fragment = parseRange(range); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
605 annot.setTargetFragment(fragment); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
606 } |
| 52 | 607 } |
| 608 } catch (JSONException e) { | |
| 609 // nothing to do | |
| 3 | 610 } |
| 52 | 611 try { |
| 61 | 612 if (jo.has("shapes")) { |
|
63
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
613 JSONArray shapes = jo.getJSONArray("shapes"); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
614 if (shapes.length() > 0) { |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
615 JSONObject shape = shapes.getJSONObject(0); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
616 annot.setFragmentType(FragmentTypes.AREA); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
617 String fragment = parseShape(shape); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
618 annot.setTargetFragment(fragment); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
619 } |
| 61 | 620 } |
| 621 } catch (JSONException e) { | |
| 622 // nothing to do | |
| 623 } | |
| 624 // deprecated areas type | |
| 625 try { | |
| 52 | 626 if (jo.has("areas")) { |
|
63
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
627 JSONArray areas = jo.getJSONArray("areas"); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
628 if (areas.length() > 0) { |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
629 JSONObject area = areas.getJSONObject(0); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
630 annot.setFragmentType(FragmentTypes.AREA); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
631 String fragment = parseArea(area); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
632 annot.setTargetFragment(fragment); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
633 } |
| 52 | 634 } |
| 635 } catch (JSONException e) { | |
| 636 // nothing to do | |
| 3 | 637 } |
|
63
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
638 // no fragment is an error |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
639 if (annot.getFragmentType() == null || annot.getTargetFragment() == null) { |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
640 throw new JSONException("Annotation has no valid target fragment!"); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
641 } |
| 64 | 642 |
| 16 | 643 /* |
| 644 * permissions | |
| 645 */ | |
| 10 | 646 if (jo.has("permissions")) { |
| 647 JSONObject permissions = jo.getJSONObject("permissions"); | |
| 648 if (permissions.has("admin")) { | |
| 649 JSONArray perms = permissions.getJSONArray("admin"); | |
| 650 Actor actor = getActorFromPermissions(perms); | |
| 651 annot.setAdminPermission(actor); | |
| 652 } | |
| 653 if (permissions.has("delete")) { | |
| 654 JSONArray perms = permissions.getJSONArray("delete"); | |
| 655 Actor actor = getActorFromPermissions(perms); | |
| 656 annot.setDeletePermission(actor); | |
| 657 } | |
| 658 if (permissions.has("update")) { | |
| 659 JSONArray perms = permissions.getJSONArray("update"); | |
| 660 Actor actor = getActorFromPermissions(perms); | |
| 661 annot.setUpdatePermission(actor); | |
| 662 } | |
| 663 if (permissions.has("read")) { | |
| 664 JSONArray perms = permissions.getJSONArray("read"); | |
| 665 Actor actor = getActorFromPermissions(perms); | |
| 666 annot.setReadPermission(actor); | |
| 667 } | |
| 668 } | |
| 669 | |
| 16 | 670 /* |
| 671 * tags | |
| 672 */ | |
| 673 if (jo.has("tags")) { | |
| 674 HashSet<String> tagset = new HashSet<String>(); | |
| 675 JSONArray tags = jo.getJSONArray("tags"); | |
| 676 for (int i = 0; i < tags.length(); ++i) { | |
| 677 tagset.add(tags.getString(i)); | |
| 678 } | |
| 679 annot.setTags(tagset); | |
| 680 } | |
| 681 | |
| 4 | 682 return annot; |
| 3 | 683 } |
| 684 | |
| 61 | 685 @SuppressWarnings("unused") |
| 686 // i in for loop | |
| 10 | 687 protected Actor getActorFromPermissions(JSONArray perms) throws JSONException { |
| 688 Actor actor = null; | |
| 689 for (int i = 0; i < perms.length(); ++i) { | |
| 690 String perm = perms.getString(i); | |
| 691 if (perm.toLowerCase().startsWith("group:")) { | |
| 692 String groupId = perm.substring(6); | |
| 693 actor = new Group(groupId); | |
| 694 } else { | |
| 695 actor = new Person(perm); | |
| 696 } | |
| 697 // we just take the first one | |
| 698 break; | |
| 699 } | |
| 700 return actor; | |
| 701 } | |
| 702 | |
|
63
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
703 public static float getFloat(String s) { |
| 61 | 704 try { |
| 705 return Float.parseFloat(s); | |
| 706 } catch (NumberFormatException e) { | |
| 707 } | |
| 708 return 0f; | |
| 709 } | |
|
63
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
710 |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
711 public static int getInt(String s) { |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
712 try { |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
713 return Integer.parseInt(s); |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
714 } catch (NumberFormatException e) { |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
715 } |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
716 return 0; |
|
9f8c9611848a
fixed bug with new rectangle shapes. added limit, offset and sortBy parameters to annotator/ and annotator/search.
casties
parents:
61
diff
changeset
|
717 } |
| 3 | 718 } |