Mercurial > hg > AnnotationManagerN4J
annotate src/main/java/de/mpiwg/itgroup/annotations/neo4j/AnnotationStore.java @ 43:d1bef7952bec
more work on resources and targets.
author | casties |
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date | Wed, 26 Sep 2012 16:27:52 +0200 |
parents | aa2bb7ac04d9 |
children | 707902d468f6 |
rev | line source |
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4 | 1 /** |
2 * | |
3 */ | |
4 package de.mpiwg.itgroup.annotations.neo4j; | |
5 | |
6 import java.util.ArrayList; | |
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7 import java.util.Arrays; |
4 | 8 import java.util.Calendar; |
16 | 9 import java.util.HashSet; |
4 | 10 import java.util.List; |
16 | 11 import java.util.Set; |
4 | 12 |
13 import org.apache.log4j.Logger; | |
5 | 14 import org.neo4j.graphdb.Direction; |
4 | 15 import org.neo4j.graphdb.GraphDatabaseService; |
16 import org.neo4j.graphdb.Node; | |
17 import org.neo4j.graphdb.Relationship; | |
18 import org.neo4j.graphdb.RelationshipType; | |
19 import org.neo4j.graphdb.Transaction; | |
20 import org.neo4j.graphdb.index.Index; | |
21 import org.neo4j.graphdb.index.IndexHits; | |
22 | |
9 | 23 import de.mpiwg.itgroup.annotations.Actor; |
4 | 24 import de.mpiwg.itgroup.annotations.Annotation; |
25 import de.mpiwg.itgroup.annotations.Annotation.FragmentTypes; | |
12 | 26 import de.mpiwg.itgroup.annotations.Group; |
10 | 27 import de.mpiwg.itgroup.annotations.Person; |
42 | 28 import de.mpiwg.itgroup.annotations.Resource; |
28 | 29 import de.mpiwg.itgroup.annotations.Tag; |
42 | 30 import de.mpiwg.itgroup.annotations.Target; |
31 import de.mpiwg.itgroup.annotations.Uri; | |
4 | 32 |
33 /** | |
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34 * Neo4J based Annotation store. |
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35 * |
4 | 36 * @author casties |
37 * | |
38 */ | |
39 public class AnnotationStore { | |
40 | |
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41 protected static Logger logger = Logger.getLogger(AnnotationStore.class); |
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42 |
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43 protected GraphDatabaseService graphDb; |
4 | 44 |
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45 public static enum NodeTypes { |
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46 ANNOTATION, PERSON, TARGET, GROUP, TAG, RESOURCE |
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47 } |
4 | 48 |
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49 // types of nodes that should not be automatically deleted. |
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50 public Set<String> permanentNodeTypes = new HashSet<String>(Arrays.asList("PERSON", "GROUP", "TAG")); |
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51 |
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52 protected List<Index<Node>> nodeIndexes; |
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53 |
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54 public static enum RelationTypes implements RelationshipType { |
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55 ANNOTATES, CREATED, PERMITS_ADMIN, PERMITS_DELETE, PERMITS_UPDATE, PERMITS_READ, MEMBER_OF, HAS_TAG, PART_OF |
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56 } |
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57 |
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58 public static String ANNOTATION_URI_BASE = "http://entities.mpiwg-berlin.mpg.de/annotations/"; |
4 | 59 |
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60 public AnnotationStore(GraphDatabaseService graphDb) { |
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61 super(); |
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62 this.graphDb = graphDb; |
16 | 63 nodeIndexes = new ArrayList<Index<Node>>(5); |
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64 // List.set(enum.ordinal(), val) seems not to work. |
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65 nodeIndexes.add(NodeTypes.ANNOTATION.ordinal(), graphDb.index().forNodes("annotations")); |
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66 nodeIndexes.add(NodeTypes.PERSON.ordinal(), graphDb.index().forNodes("persons")); |
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67 nodeIndexes.add(NodeTypes.TARGET.ordinal(), graphDb.index().forNodes("targets")); |
15 | 68 nodeIndexes.add(NodeTypes.GROUP.ordinal(), graphDb.index().forNodes("groups")); |
16 | 69 nodeIndexes.add(NodeTypes.TAG.ordinal(), graphDb.index().forNodes("tags")); |
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70 nodeIndexes.add(NodeTypes.RESOURCE.ordinal(), graphDb.index().forNodes("resources")); |
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71 } |
4 | 72 |
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73 protected Index<Node> getNodeIndex(NodeTypes type) { |
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74 return nodeIndexes.get(type.ordinal()); |
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75 } |
12 | 76 |
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77 /** |
15 | 78 * @param userUri |
79 * @return | |
80 */ | |
81 public Node getPersonNodeByUri(String userUri) { | |
82 if (userUri == null) return null; | |
83 Node person = getNodeIndex(NodeTypes.PERSON).get("uri", userUri).getSingle(); | |
84 return person; | |
85 } | |
86 | |
28 | 87 /** |
88 * @param tagUri | |
89 * @return | |
90 */ | |
91 public Node getTagNodeByUri(String tagUri) { | |
92 if (tagUri == null) return null; | |
93 Node person = getNodeIndex(NodeTypes.TAG).get("uri", tagUri).getSingle(); | |
94 return person; | |
95 } | |
96 | |
42 | 97 /** |
43 | 98 * @param resourceUri |
99 * @return | |
100 */ | |
101 public Node getResourceNodeByUri(String resourceUri) { | |
102 return getNodeFromIndex("uri", resourceUri, NodeTypes.RESOURCE); | |
103 } | |
104 | |
105 /** | |
106 * @param targetUri | |
107 * @return | |
108 */ | |
109 public Node getTargetNodeByUri(String targetUri) { | |
110 return getNodeFromIndex("uri", targetUri, NodeTypes.RESOURCE); | |
111 } | |
112 | |
113 /** | |
42 | 114 * Returns the Node with the given key and value. |
115 * Key has to be indexed. | |
116 * | |
117 * @param key | |
118 * @param value | |
119 * @param type | |
120 * @return | |
121 */ | |
122 public Node getNodeFromIndex(String key, String value, NodeTypes type) { | |
123 if (key == null || value == null) return null; | |
124 Node person = getNodeIndex(type).get(key, value).getSingle(); | |
125 return person; | |
126 } | |
127 | |
128 /** | |
129 * Returns list of Actors of given type (Group or Person). | |
130 * Key has to be indexed. | |
131 * | |
132 * @param key | |
133 * @param query | |
134 * @param type | |
135 * @return | |
136 */ | |
137 @SuppressWarnings("unchecked") | |
138 public <T extends Actor> List<T> getActors(String key, String query, NodeTypes type) { | |
139 ArrayList<T> actors = new ArrayList<T>(); | |
24 | 140 Index<Node> idx = getNodeIndex(type); |
141 if (key == null) { | |
142 key = "uri"; | |
143 query = "*"; | |
144 } | |
145 IndexHits<Node> actorNodes = idx.query(key, query); | |
146 for (Node actorNode : actorNodes) { | |
147 Actor actor = createActorFromNode(actorNode); | |
42 | 148 actors.add((T) actor); |
24 | 149 } |
150 return actors; | |
151 } | |
42 | 152 |
15 | 153 /** |
42 | 154 * Returns list of groups. Key has to be indexed. |
19 | 155 * @param key |
156 * @param query | |
18 | 157 * @return |
158 */ | |
19 | 159 public List<Group> getGroups(String key, String query) { |
42 | 160 List<Group> groups = getActors(key, query, NodeTypes.GROUP); |
161 return groups; | |
162 } | |
163 | |
164 /** | |
165 * Returns list of Persons. Key has to be indexed. | |
166 * @param key | |
167 * @param query | |
168 * @return | |
169 */ | |
170 public List<Person> getPersons(String key, String query) { | |
171 List<Person> persons = getActors(key, query, NodeTypes.PERSON); | |
172 return persons; | |
173 } | |
174 | |
175 /** | |
176 * Returns list of uri-like objects of given type (Target or Resource). | |
177 * Key has to be indexed. | |
178 * | |
179 * @param key | |
180 * @param query | |
181 * @param type | |
182 * @return | |
183 */ | |
184 @SuppressWarnings("unchecked") | |
185 public <T extends Uri> List<T> getUris(String key, String query, NodeTypes type) { | |
186 ArrayList<T> uris = new ArrayList<T>(); | |
187 Index<Node> idx = getNodeIndex(type); | |
19 | 188 if (key == null) { |
189 key = "uri"; | |
190 query = "*"; | |
191 } | |
42 | 192 IndexHits<Node> actorNodes = idx.query(key, query); |
193 for (Node actorNode : actorNodes) { | |
194 Uri uri = createUriFromNode(actorNode); | |
195 uris.add((T) uri); | |
18 | 196 } |
42 | 197 return uris; |
18 | 198 } |
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199 |
42 | 200 |
201 /** | |
202 * Returns list of Targets. Key has to be indexed. | |
203 * @param key | |
204 * @param query | |
205 * @return | |
206 */ | |
207 public List<Target> getTargets(String key, String query) { | |
208 List<Target> targets = getUris(key, query, NodeTypes.TARGET); | |
209 return targets; | |
210 } | |
211 | |
212 /** | |
213 * Returns list of Resources. Key has to be indexed. | |
214 * @param key | |
215 * @param query | |
216 * @return | |
217 */ | |
218 public List<Resource> getResources(String key, String query) { | |
219 List<Resource> targets = getUris(key, query, NodeTypes.RESOURCE); | |
220 return targets; | |
221 } | |
222 | |
28 | 223 /** |
31 | 224 * Returns List of Annotations. |
225 * Key has to be indexed. | |
226 * | |
227 * @param key | |
228 * @param query | |
229 * @return | |
230 */ | |
231 public List<Annotation> getAnnotations(String key, String query) { | |
232 ArrayList<Annotation> annotations = new ArrayList<Annotation>(); | |
233 Index<Node> idx = getNodeIndex(NodeTypes.ANNOTATION); | |
234 if (key == null) { | |
235 key = "id"; | |
236 query = "*"; | |
237 } | |
238 IndexHits<Node> annotNodes = idx.query(key, query); | |
239 for (Node annotNode : annotNodes) { | |
240 Annotation annotation = createAnnotationFromNode(annotNode); | |
241 annotations.add(annotation); | |
242 } | |
243 return annotations; | |
244 } | |
245 | |
246 | |
247 | |
248 /** | |
28 | 249 * Returns List of Tags. |
250 * Key has to be indexed. | |
251 * | |
252 * @param key | |
253 * @param query | |
254 * @return | |
255 */ | |
256 public List<Tag> getTags(String key, String query) { | |
257 ArrayList<Tag> tags = new ArrayList<Tag>(); | |
258 Index<Node> idx = getNodeIndex(NodeTypes.TAG); | |
259 if (key == null) { | |
260 key = "uri"; | |
261 query = "*"; | |
262 } | |
263 IndexHits<Node> groupNodes = idx.query(key, query); | |
264 for (Node groupNode : groupNodes) { | |
265 Tag tag = createTagFromNode(groupNode); | |
266 tags.add(tag); | |
267 } | |
268 return tags; | |
269 } | |
18 | 270 |
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271 /** |
15 | 272 * Returns List of Groups the person is member of. |
273 * | |
274 * @param person | |
275 * @return | |
276 */ | |
277 public List<Group> getGroupsForPersonNode(Node person) { | |
278 ArrayList<Group> groups = new ArrayList<Group>(); | |
279 Iterable<Relationship> rels = person.getRelationships(RelationTypes.MEMBER_OF); | |
280 for (Relationship rel : rels) { | |
281 Node groupNode = rel.getEndNode(); | |
282 Actor group = createActorFromNode(groupNode); | |
283 // make sure we're getting a group | |
284 if (!(group instanceof Group)) { | |
16 | 285 logger.error("target of MEMBER_OF is not GROUP! rel=" + rel); |
15 | 286 continue; |
287 } | |
288 groups.add((Group) group); | |
289 } | |
290 return groups; | |
291 } | |
16 | 292 |
15 | 293 /** |
294 * Returns if person with uri is in Group group. | |
295 * | |
296 * @param person | |
297 * @param group | |
298 * @return | |
299 */ | |
300 public boolean isPersonInGroup(Person person, Group group) { | |
301 Node pn = getPersonNodeByUri(person.getUriString()); | |
302 if (pn == null) return false; | |
16 | 303 // optimized version of getGroupsForPersonNode |
15 | 304 Iterable<Relationship> rels = pn.getRelationships(RelationTypes.MEMBER_OF); |
305 for (Relationship rel : rels) { | |
306 Node gn = rel.getEndNode(); | |
307 if (gn.getProperty("uri", "").equals(group.getUriString()) || gn.getProperty("id", "").equals(group.getId())) { | |
308 return true; | |
309 } | |
310 } | |
311 return false; | |
312 } | |
16 | 313 |
15 | 314 /** |
22 | 315 * Returns the members of the group. |
316 * | |
317 * @param group | |
318 * @return | |
319 */ | |
320 public List<Person> getMembersOfGroup(Group group) { | |
321 ArrayList<Person> members = new ArrayList<Person>(); | |
322 Node gn = getActorNode(group); | |
323 Iterable<Relationship> rels = gn.getRelationships(RelationTypes.MEMBER_OF); | |
324 for (Relationship rel : rels) { | |
325 Node memberNode = rel.getStartNode(); | |
326 Actor member = createActorFromNode(memberNode); | |
327 // make sure we're getting a group | |
328 if (!(member instanceof Person)) { | |
329 logger.error("source of MEMBER_OF is not PERSON! rel=" + rel); | |
330 continue; | |
331 } | |
332 members.add((Person) member); | |
333 } | |
334 return members; | |
335 } | |
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336 |
22 | 337 /** |
25 | 338 * Add Person newMember to Group group. |
339 * | |
340 * @param group | |
341 * @param member | |
342 */ | |
343 public Person addGroupMember(Group group, Person member) { | |
344 Node gn = getActorNode(group); | |
345 Node pn = getActorNode(member); | |
346 Person addedMember = null; | |
347 if (gn != null && pn != null) { | |
348 getOrCreateRelation(pn, RelationTypes.MEMBER_OF, gn); | |
349 addedMember = member; | |
350 } | |
351 return addedMember; | |
352 } | |
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353 |
25 | 354 /** |
355 * Delete Person oldMember from Group group. | |
356 * | |
357 * @param group | |
358 * @param member | |
359 */ | |
360 public void deleteGroupMember(Group group, Person member) { | |
361 Node gn = getActorNode(group); | |
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362 Node pn = getActorNode(member); |
25 | 363 Iterable<Relationship> rels = gn.getRelationships(RelationTypes.MEMBER_OF); |
364 for (Relationship rel : rels) { | |
365 Node mn = rel.getStartNode(); | |
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366 if (mn.equals(pn)) { |
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367 Transaction tx = graphDb.beginTx(); |
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368 try { |
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369 rel.delete(); |
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370 tx.success(); |
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371 } finally { |
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372 tx.finish(); |
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373 } |
25 | 374 // there should be only one |
375 break; | |
376 } | |
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377 } |
25 | 378 } |
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379 |
25 | 380 /** |
22 | 381 * Returns the stored Actor matching the given one. |
382 * | |
383 * @param actor | |
384 * @return | |
385 */ | |
386 public Actor getActor(Actor actor) { | |
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387 Node actorNode = getActorNode(actor); |
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388 Actor storedActor = createActorFromNode(actorNode); |
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389 return storedActor; |
22 | 390 } |
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391 |
22 | 392 /** |
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393 * Stores an Actor (Person or Group). Creates a new actor Node or update an |
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394 * existing one. |
22 | 395 * |
396 * @param actor | |
397 * @return | |
398 */ | |
399 public Actor storeActor(Actor actor) { | |
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400 Node actorNode = getOrCreateActorNode(actor); |
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401 Transaction tx = graphDb.beginTx(); |
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402 try { |
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403 // id |
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404 String id = actor.getId(); |
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405 if (id != null) { |
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406 actorNode.setProperty("id", id); |
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407 } |
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408 // name |
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409 String name = actor.getName(); |
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410 if (name != null) { |
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411 actorNode.setProperty("name", name); |
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412 } |
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413 // uri |
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414 String uri = actor.getUri(); |
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415 if (uri != null) { |
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416 actorNode.setProperty("uri", uri); |
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417 } |
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418 tx.success(); |
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419 } finally { |
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420 tx.finish(); |
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421 } |
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422 Actor storedActor = createActorFromNode(actorNode); |
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423 return storedActor; |
22 | 424 } |
32
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425 |
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426 /** |
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427 * Deletes the given Actor. |
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428 * |
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429 * @param actor |
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430 */ |
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431 public void deleteActor(Actor actor) { |
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432 String uri = actor.getUriString(); |
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433 Index<Node> idx; |
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434 if (actor.isGroup()) { |
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435 idx = getNodeIndex(NodeTypes.GROUP); |
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436 } else { |
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437 idx = getNodeIndex(NodeTypes.PERSON); |
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438 } |
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439 Node actorNode = idx.get("uri", uri).getSingle(); |
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440 if (actorNode != null) { |
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441 // delete relations |
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442 Transaction tx = graphDb.beginTx(); |
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443 try { |
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444 for (Relationship rel : actorNode.getRelationships()) { |
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445 rel.delete(); |
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446 } |
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447 if (!actorNode.hasRelationship()) { |
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448 // this shouldn't happen |
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449 deleteNode(actorNode); |
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450 } else { |
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451 logger.error("deleteActor: unable to delete: Node still has relations."); |
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452 } |
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453 tx.success(); |
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454 } finally { |
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455 tx.finish(); |
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456 } |
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457 } |
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458 } |
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459 |
22 | 460 /** |
14
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461 * Returns the Annotation with the given id. |
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462 * |
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463 * @param id |
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464 * @return |
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465 */ |
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466 public Annotation getAnnotationById(String id) { |
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467 Node annotNode = getNodeIndex(NodeTypes.ANNOTATION).get("id", id).getSingle(); |
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468 Annotation annot = createAnnotationFromNode(annotNode); |
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469 return annot; |
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470 } |
6 | 471 |
14
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472 /** |
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473 * Returns an Annotation object from an annotation-Node. |
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474 * |
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475 * @param annotNode |
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476 * @return |
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477 */ |
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478 public Annotation createAnnotationFromNode(Node annotNode) { |
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479 Annotation annot = new Annotation(); |
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480 annot.setUri((String) annotNode.getProperty("id", null)); |
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481 annot.setBodyText((String) annotNode.getProperty("bodyText", null)); |
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482 annot.setBodyUri((String) annotNode.getProperty("bodyUri", null)); |
16 | 483 /* |
484 * get annotation target from relation | |
485 */ | |
14
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486 Relationship targetRel = getRelation(annotNode, RelationTypes.ANNOTATES, null); |
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487 if (targetRel != null) { |
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488 Node target = targetRel.getEndNode(); |
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489 annot.setTargetBaseUri((String) target.getProperty("uri", null)); |
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490 } else { |
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491 logger.error("annotation " + annotNode + " has no target node!"); |
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492 } |
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493 annot.setTargetFragment((String) annotNode.getProperty("targetFragment", null)); |
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494 String ft = (String) annotNode.getProperty("fragmentType", null); |
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495 if (ft != null) { |
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496 annot.setFragmentType(FragmentTypes.valueOf(ft)); |
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497 } |
16 | 498 /* |
499 * get creator from relation | |
500 */ | |
14
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501 Relationship creatorRel = getRelation(annotNode, RelationTypes.CREATED, null); |
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502 if (creatorRel != null) { |
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503 Node creatorNode = creatorRel.getStartNode(); |
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504 Actor creator = createActorFromNode(creatorNode); |
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505 annot.setCreator(creator); |
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506 } else { |
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507 logger.error("annotation " + annotNode + " has no creator node!"); |
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508 } |
16 | 509 /* |
510 * get creation date | |
511 */ | |
14
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512 annot.setCreated((String) annotNode.getProperty("created", null)); |
16 | 513 /* |
514 * get permissions | |
515 */ | |
14
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516 Relationship adminRel = getRelation(annotNode, RelationTypes.PERMITS_ADMIN, null); |
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517 if (adminRel != null) { |
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518 Node adminNode = adminRel.getEndNode(); |
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519 Actor admin = createActorFromNode(adminNode); |
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520 annot.setAdminPermission(admin); |
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521 } |
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522 Relationship deleteRel = getRelation(annotNode, RelationTypes.PERMITS_DELETE, null); |
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523 if (deleteRel != null) { |
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524 Node deleteNode = deleteRel.getEndNode(); |
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525 Actor delete = createActorFromNode(deleteNode); |
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526 annot.setDeletePermission(delete); |
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527 } |
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528 Relationship updateRel = getRelation(annotNode, RelationTypes.PERMITS_UPDATE, null); |
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529 if (updateRel != null) { |
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530 Node updateNode = updateRel.getEndNode(); |
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531 Actor update = createActorFromNode(updateNode); |
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532 annot.setUpdatePermission(update); |
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533 } |
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534 Relationship readRel = getRelation(annotNode, RelationTypes.PERMITS_READ, null); |
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535 if (readRel != null) { |
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536 Node readNode = readRel.getEndNode(); |
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537 Actor read = createActorFromNode(readNode); |
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538 annot.setReadPermission(read); |
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539 } |
16 | 540 /* |
541 * get tags | |
542 */ | |
543 Set<String> tags = new HashSet<String>(); | |
544 for (Relationship rel : annotNode.getRelationships(RelationTypes.HAS_TAG)) { | |
545 String tag = (String) rel.getEndNode().getProperty("name", null); | |
546 if (tag != null) { | |
547 tags.add(tag); | |
548 } | |
549 } | |
550 annot.setTags(tags); | |
4 | 551 |
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552 return annot; |
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553 } |
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554 |
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555 /** |
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556 * Returns an Actor object from a node. |
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557 * |
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558 * @param actorNode |
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559 * @return |
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560 */ |
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561 protected Actor createActorFromNode(Node actorNode) { |
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562 if (actorNode == null) return null; |
15 | 563 String id = (String) actorNode.getProperty("id", null); |
14
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564 String uri = (String) actorNode.getProperty("uri", null); |
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565 String name = (String) actorNode.getProperty("name", null); |
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566 String type = (String) actorNode.getProperty("TYPE", null); |
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567 if (type != null && type.equals("PERSON")) { |
15 | 568 return new Person(id, uri, name); |
14
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569 } else if (type != null && type.equals("GROUP")) { |
15 | 570 return new Group(id, uri, name); |
14
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571 } |
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572 return null; |
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573 } |
32
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574 |
28 | 575 public Tag createTagFromNode(Node tagNode) { |
32
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576 if (tagNode == null) return null; |
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577 String name = (String) tagNode.getProperty("name", null); |
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578 String uri = (String) tagNode.getProperty("uri", null); |
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579 String id = (String) tagNode.getProperty("id", null); |
28 | 580 |
32
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581 return new Tag(id, uri, name); |
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582 |
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583 } |
4 | 584 |
43 | 585 /** |
586 * @param resourceNode | |
587 * @return | |
588 */ | |
589 public Resource createResourceFromNode(Node resourceNode) { | |
590 return (Resource) createUriFromNode(resourceNode); | |
591 } | |
592 | |
593 /** | |
594 * @param targetNode | |
595 * @return | |
596 */ | |
597 public Target createTargetFromNode(Node targetNode) { | |
598 return (Target) createUriFromNode(targetNode); | |
599 } | |
600 | |
601 | |
42 | 602 protected Uri createUriFromNode(Node uriNode) { |
603 if (uriNode == null) return null; | |
604 String uri = (String) uriNode.getProperty("uri", null); | |
605 String type = (String) uriNode.getProperty("TYPE", null); | |
606 if (type != null && type.equals("TARGET")) { | |
607 return new Target(uri); | |
608 } else if (type != null && type.equals("RESOURCE")) { | |
609 return new Resource(uri); | |
610 } | |
611 return null; | |
612 } | |
613 | |
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614 /** |
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615 * Store a new annotation in the store or update an existing one. Returns |
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616 * the stored annotation. |
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617 * |
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618 * @param annot |
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619 * @return |
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620 */ |
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621 public Annotation storeAnnotation(Annotation annot) { |
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622 Node annotNode = null; |
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623 Transaction tx = graphDb.beginTx(); |
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624 try { |
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625 /* |
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626 * create or get the annotation |
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627 */ |
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628 String id = annot.getUri(); |
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629 if (id == null) { |
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630 id = createRessourceURI("annot:"); |
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631 } |
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632 annotNode = getOrCreateAnnotationNode(id); |
4 | 633 |
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634 /* |
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635 * the annotation body |
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636 */ |
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637 String bodyText = annot.getBodyText(); |
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638 if (bodyText != null) { |
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639 annotNode.setProperty("bodyText", bodyText); |
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640 } |
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641 String bodyUri = annot.getBodyUri(); |
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642 if (bodyUri != null) { |
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643 annotNode.setProperty("bodyUri", bodyUri); |
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644 } |
4 | 645 |
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646 /* |
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647 * the annotation target |
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648 */ |
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649 String targetBaseUri = annot.getTargetBaseUri(); |
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650 Node targetNode = null; |
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651 if (targetBaseUri != null) { |
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652 targetNode = getOrCreateTargetNode(targetBaseUri, NodeTypes.TARGET); |
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653 getOrCreateRelation(annotNode, RelationTypes.ANNOTATES, targetNode); |
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654 } |
4 | 655 |
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656 /* |
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657 * The fragment part of the annotation target. |
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658 */ |
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659 String targetFragment = annot.getTargetFragment(); |
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660 FragmentTypes fragmentType = annot.getFragmentType(); |
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661 if (targetFragment != null) { |
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662 annotNode.setProperty("targetFragment", targetFragment); |
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663 annotNode.setProperty("fragmentType", fragmentType.name()); |
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664 } |
4 | 665 |
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666 /* |
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667 * the annotation resource |
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668 */ |
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669 String resourceUri = annot.getResourceUri(); |
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670 if (resourceUri != null) { |
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671 Node resource = getOrCreateTargetNode(resourceUri, NodeTypes.RESOURCE); |
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672 getOrCreateRelation(annotNode, RelationTypes.ANNOTATES, resource); |
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673 getOrCreateRelation(targetNode, RelationTypes.PART_OF, resource); |
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674 } |
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675 |
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676 /* |
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677 * The creator of this annotation. |
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678 */ |
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679 Actor creator = annot.getCreator(); |
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680 if (creator != null) { |
15 | 681 Node creatorNode = getOrCreateActorNode(creator); |
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682 getOrCreateRelation(creatorNode, RelationTypes.CREATED, annotNode); |
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683 } |
12 | 684 |
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685 /* |
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686 * The creation date of this annotation. |
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687 */ |
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688 String created = annot.getCreated(); |
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689 if (created != null) { |
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690 annotNode.setProperty("created", created); |
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691 } |
4 | 692 |
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693 /* |
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694 * Permissions for this annotation. |
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695 */ |
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696 setPermissionRelation(annotNode, RelationTypes.PERMITS_ADMIN, annot.getAdminPermission()); |
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697 setPermissionRelation(annotNode, RelationTypes.PERMITS_DELETE, annot.getDeletePermission()); |
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698 setPermissionRelation(annotNode, RelationTypes.PERMITS_UPDATE, annot.getUpdatePermission()); |
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699 setPermissionRelation(annotNode, RelationTypes.PERMITS_READ, annot.getReadPermission()); |
6 | 700 |
16 | 701 /* |
702 * Tags on this annotation. | |
703 */ | |
704 Set<String> newTags = annot.getTags(); | |
705 // we ignore existing tags if tags == null | |
706 if (newTags != null) { | |
707 List<Relationship> oldHasTags = new ArrayList<Relationship>(); | |
708 for (Relationship rel : annotNode.getRelationships(RelationTypes.HAS_TAG)) { | |
709 oldHasTags.add(rel); | |
710 } | |
711 // adjust to new tags | |
712 if (newTags.isEmpty()) { | |
713 // remove old tags | |
714 if (!oldHasTags.isEmpty()) { | |
715 for (Relationship rel : oldHasTags) { | |
716 rel.delete(); | |
717 // TODO: should we delete orphan nodes too? | |
718 } | |
719 } | |
720 } else { | |
721 if (!oldHasTags.isEmpty()) { | |
722 // adjust old tags | |
723 for (Relationship rel : oldHasTags) { | |
724 String oldTag = (String) rel.getEndNode().getProperty("name", null); | |
725 if (newTags.contains(oldTag)) { | |
726 // tag exists | |
727 newTags.remove(oldTag); | |
728 } else { | |
729 // tag exists no longer | |
730 rel.delete(); | |
731 // TODO: should we delete orphan nodes too? | |
732 } | |
733 } | |
734 } | |
735 if (!newTags.isEmpty()) { | |
736 // still tags to add | |
737 for (String tag : newTags) { | |
738 // create new tag | |
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739 Node tagNode = getOrCreateTagNode(new Tag(null, null, tag)); |
16 | 740 getOrCreateRelation(annotNode, RelationTypes.HAS_TAG, tagNode); |
741 } | |
742 } | |
743 | |
744 } | |
745 } | |
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746 tx.success(); |
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747 } finally { |
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748 tx.finish(); |
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749 } |
12 | 750 |
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751 // re-read and return annotation |
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752 Annotation storedAnnot = createAnnotationFromNode(annotNode); |
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753 return storedAnnot; |
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754 } |
4 | 755 |
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756 /** |
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757 * Deletes the annotation with the given id. |
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758 * |
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759 * @param id |
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760 */ |
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761 public void deleteAnnotationById(String id) { |
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762 Node annotNode = getNodeIndex(NodeTypes.ANNOTATION).get("id", id).getSingle(); |
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763 if (annotNode != null) { |
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764 // delete related objects |
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765 Transaction tx = graphDb.beginTx(); |
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766 try { |
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767 for (Relationship rel : annotNode.getRelationships()) { |
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768 // delete relation and the related node if it has no other |
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769 // relations and is not permanent |
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770 Node other = rel.getOtherNode(annotNode); |
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771 rel.delete(); |
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772 if (!(other.hasRelationship() || permanentNodeTypes.contains(other.getProperty("TYPE", null)))) { |
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773 deleteNode(other); |
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774 } |
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775 } |
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776 if (!annotNode.hasRelationship()) { |
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777 deleteNode(annotNode); |
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778 } else { |
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779 logger.error("deleteById: unable to delete: Node still has relations."); |
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780 } |
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781 tx.success(); |
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782 } finally { |
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783 tx.finish(); |
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784 } |
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785 } |
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786 } |
4 | 787 |
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788 /** |
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789 * Returns all annotations with the given uri and/or user. |
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790 * |
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791 * @param uri |
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792 * @param userUri |
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793 * @param limit |
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794 * @param offset |
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795 * @return |
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796 */ |
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797 public List<Annotation> searchAnnotationByUriUser(String targetUri, String userUri, String limit, String offset) { |
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798 List<Annotation> annotations = new ArrayList<Annotation>(); |
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799 if (targetUri != null) { |
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800 // there should be only one |
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801 Node target = getNodeIndex(NodeTypes.TARGET).get("uri", targetUri).getSingle(); |
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802 if (target != null) { |
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803 Iterable<Relationship> relations = target.getRelationships(RelationTypes.ANNOTATES); |
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804 for (Relationship relation : relations) { |
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805 Node ann = relation.getStartNode(); |
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806 if (ann.getProperty("TYPE", "").equals("ANNOTATION")) { |
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807 Annotation annot = createAnnotationFromNode(ann); |
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|
808 annotations.add(annot); |
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|
809 } else { |
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810 logger.error("ANNOTATES relation does not start with ANNOTATION: " + ann); |
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|
811 } |
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permissions mostly work. need more server-side checking.
casties
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812 } |
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permissions mostly work. need more server-side checking.
casties
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813 } |
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permissions mostly work. need more server-side checking.
casties
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diff
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|
814 } |
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|
815 if (userUri != null) { |
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|
816 // there should be only one |
15 | 817 Node person = getPersonNodeByUri(userUri); |
14
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818 if (person != null) { |
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819 Iterable<Relationship> relations = person.getRelationships(RelationTypes.CREATED); |
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820 for (Relationship relation : relations) { |
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821 Node ann = relation.getEndNode(); |
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822 if (ann.getProperty("TYPE", "").equals("ANNOTATION")) { |
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823 Annotation annot = createAnnotationFromNode(ann); |
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824 annotations.add(annot); |
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permissions mostly work. need more server-side checking.
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825 } else { |
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826 logger.error("CREATED relation does not end with ANNOTATION: " + ann); |
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827 } |
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828 } |
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829 } |
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830 } |
16 | 831 // TODO: if both uri and user are given we should intersect |
14
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832 return annotations; |
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833 } |
5 | 834 |
16 | 835 /** |
836 * Returns Relationship of type from Node start to Node end. Creates one if | |
837 * it doesn't exist. | |
838 * | |
839 * @param start | |
840 * @param type | |
841 * @param end | |
842 * @return | |
843 */ | |
14
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844 protected Relationship getOrCreateRelation(Node start, RelationshipType type, Node end) { |
40
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845 if (start == null || end == null) return null; |
14
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846 if (start.hasRelationship()) { |
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847 // there are relations |
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848 Iterable<Relationship> rels = start.getRelationships(type, Direction.OUTGOING); |
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849 for (Relationship rel : rels) { |
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850 if (rel.getEndNode().equals(end)) { |
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|
851 // relation exists |
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852 return rel; |
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853 } |
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permissions mostly work. need more server-side checking.
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854 } |
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|
855 } |
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856 // create new one |
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|
857 Relationship rel; |
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|
858 Transaction tx = graphDb.beginTx(); |
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|
859 try { |
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860 rel = start.createRelationshipTo(end, type); |
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|
861 tx.success(); |
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|
862 } finally { |
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|
863 tx.finish(); |
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|
864 } |
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|
865 return rel; |
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|
866 } |
12 | 867 |
14
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|
868 protected Node getOrCreateAnnotationNode(String id) { |
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|
869 Index<Node> idx = getNodeIndex(NodeTypes.ANNOTATION); |
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|
870 IndexHits<Node> annotations = idx.get("id", id); |
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871 Node annotation = annotations.getSingle(); |
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|
872 if (annotation == null) { |
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|
873 // does not exist yet |
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|
874 Transaction tx = graphDb.beginTx(); |
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|
875 try { |
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diff
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|
876 annotation = graphDb.createNode(); |
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|
877 annotation.setProperty("TYPE", NodeTypes.ANNOTATION.name()); |
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|
878 annotation.setProperty("id", id); |
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diff
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|
879 idx.add(annotation, "id", id); |
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diff
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|
880 tx.success(); |
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diff
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|
881 } finally { |
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|
882 tx.finish(); |
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|
883 } |
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|
884 } |
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diff
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|
885 return annotation; |
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|
886 } |
6 | 887 |
40
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diff
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|
888 protected Node getOrCreateTargetNode(String uri, NodeTypes type) { |
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saving and loading resource targets should work now (no searching yet)
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diff
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|
889 Index<Node> idx = getNodeIndex(type); |
14
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diff
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|
890 IndexHits<Node> targets = idx.get("uri", uri); |
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|
891 Node target = targets.getSingle(); |
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permissions mostly work. need more server-side checking.
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diff
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|
892 if (target == null) { |
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permissions mostly work. need more server-side checking.
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diff
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|
893 // does not exist yet |
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diff
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|
894 Transaction tx = graphDb.beginTx(); |
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diff
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|
895 try { |
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diff
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|
896 target = graphDb.createNode(); |
40
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diff
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|
897 target.setProperty("TYPE", type.name()); |
14
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13
diff
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|
898 target.setProperty("uri", uri); |
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parents:
13
diff
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|
899 idx.add(target, "uri", uri); |
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permissions mostly work. need more server-side checking.
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13
diff
changeset
|
900 tx.success(); |
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diff
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|
901 } finally { |
629e15b345aa
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diff
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|
902 tx.finish(); |
629e15b345aa
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|
903 } |
629e15b345aa
permissions mostly work. need more server-side checking.
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|
904 } |
629e15b345aa
permissions mostly work. need more server-side checking.
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diff
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|
905 return target; |
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permissions mostly work. need more server-side checking.
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diff
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|
906 } |
4 | 907 |
22 | 908 protected Node getActorNode(Actor actor) { |
909 // Person/Group is identified by URI or id | |
910 String uri = actor.getUriString(); | |
911 Index<Node> idx; | |
912 if (actor.isGroup()) { | |
913 idx = getNodeIndex(NodeTypes.GROUP); | |
914 } else { | |
915 idx = getNodeIndex(NodeTypes.PERSON); | |
916 } | |
917 IndexHits<Node> persons = idx.get("uri", uri); | |
918 Node person = persons.getSingle(); | |
919 return person; | |
920 } | |
32
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casties
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29
diff
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|
921 |
15 | 922 protected Node getOrCreateActorNode(Actor actor) { |
923 // Person/Group is identified by URI or id | |
14
629e15b345aa
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diff
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|
924 String uri = actor.getUriString(); |
629e15b345aa
permissions mostly work. need more server-side checking.
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|
925 String name = actor.getName(); |
15 | 926 String id = actor.getId(); |
927 Index<Node> idx; | |
928 if (actor.isGroup()) { | |
929 idx = getNodeIndex(NodeTypes.GROUP); | |
930 } else { | |
931 idx = getNodeIndex(NodeTypes.PERSON); | |
932 } | |
14
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diff
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|
933 IndexHits<Node> persons = idx.get("uri", uri); |
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diff
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|
934 Node person = persons.getSingle(); |
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diff
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|
935 if (person == null) { |
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parents:
13
diff
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|
936 // does not exist yet |
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13
diff
changeset
|
937 Transaction tx = graphDb.beginTx(); |
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diff
changeset
|
938 try { |
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diff
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|
939 person = graphDb.createNode(); |
15 | 940 if (actor.isGroup()) { |
941 person.setProperty("TYPE", NodeTypes.GROUP.name()); | |
942 } else { | |
16 | 943 person.setProperty("TYPE", NodeTypes.PERSON.name()); |
15 | 944 } |
14
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parents:
13
diff
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|
945 person.setProperty("uri", uri); |
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casties
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13
diff
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|
946 idx.add(person, "uri", uri); |
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casties
parents:
13
diff
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|
947 if (name != null) { |
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parents:
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diff
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|
948 person.setProperty("name", name); |
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diff
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|
949 } |
15 | 950 if (id != null) { |
951 person.setProperty("id", id); | |
952 } | |
14
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diff
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|
953 tx.success(); |
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diff
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|
954 } finally { |
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diff
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|
955 tx.finish(); |
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diff
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|
956 } |
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diff
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|
957 } |
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|
958 return person; |
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|
959 } |
4 | 960 |
28 | 961 protected Node getOrCreateTagNode(Tag inTag) { |
16 | 962 Index<Node> idx = getNodeIndex(NodeTypes.TAG); |
28 | 963 String tagname = inTag.getName(); |
16 | 964 IndexHits<Node> tags = idx.get("name", tagname); |
965 Node tag = tags.getSingle(); | |
966 if (tag == null) { | |
967 // does not exist yet | |
968 Transaction tx = graphDb.beginTx(); | |
969 try { | |
970 tag = graphDb.createNode(); | |
971 tag.setProperty("TYPE", NodeTypes.TAG.name()); | |
972 tag.setProperty("name", tagname); | |
973 idx.add(tag, "name", tagname); | |
32
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casties
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29
diff
changeset
|
974 |
28 | 975 tag.setProperty("id", inTag.getId()); |
976 tag.setProperty("uri", inTag.getUri()); | |
977 idx.add(tag, "uri", inTag.getUri()); | |
32
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29
diff
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|
978 |
16 | 979 tx.success(); |
980 } finally { | |
981 tx.finish(); | |
982 } | |
983 } | |
984 return tag; | |
985 } | |
986 | |
14
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casties
parents:
13
diff
changeset
|
987 /** |
629e15b345aa
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parents:
13
diff
changeset
|
988 * Create or update permissions relations for an annotation. |
629e15b345aa
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13
diff
changeset
|
989 * |
629e15b345aa
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diff
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|
990 * @param annotNode |
629e15b345aa
permissions mostly work. need more server-side checking.
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diff
changeset
|
991 * @param type |
629e15b345aa
permissions mostly work. need more server-side checking.
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diff
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|
992 * @param annot |
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permissions mostly work. need more server-side checking.
casties
parents:
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diff
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|
993 */ |
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casties
parents:
13
diff
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|
994 protected void setPermissionRelation(Node annotNode, RelationTypes type, Actor actor) { |
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permissions mostly work. need more server-side checking.
casties
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diff
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|
995 Node newActorNode = null; |
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permissions mostly work. need more server-side checking.
casties
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13
diff
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|
996 if (actor != null) { |
15 | 997 newActorNode = getOrCreateActorNode(actor); |
14
629e15b345aa
permissions mostly work. need more server-side checking.
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diff
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|
998 } |
629e15b345aa
permissions mostly work. need more server-side checking.
casties
parents:
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diff
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|
999 Relationship rel = getRelation(annotNode, type, null); |
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1000 if (rel != null) { |
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1001 // relation exists |
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1002 Node oldActorNode = rel.getEndNode(); |
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1003 if (!oldActorNode.equals(newActorNode)) { |
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1004 // new admin is different |
33 | 1005 Transaction tx = graphDb.beginTx(); |
1006 try { | |
1007 rel.delete(); | |
1008 tx.success(); | |
1009 } finally { | |
1010 tx.finish(); | |
1011 } | |
14
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1012 if (newActorNode != null) { |
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1013 rel = getOrCreateRelation(annotNode, type, newActorNode); |
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1014 } |
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1015 } |
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1016 } else { |
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1017 // no relation yet |
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1018 if (newActorNode != null) { |
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1019 rel = getOrCreateRelation(annotNode, type, newActorNode); |
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1020 } |
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1021 } |
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1022 } |
4 | 1023 |
14
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1024 /** |
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1025 * Unindexes and deletes given Node if it has no relations. |
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1026 * |
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1027 * @param node |
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1028 */ |
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1029 protected void deleteNode(Node node) { |
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1030 Transaction tx = graphDb.beginTx(); |
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1031 try { |
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1032 if (node.hasRelationship()) { |
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1033 logger.error("deleteNode: unable to delete: Node still has relations."); |
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1034 } else { |
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1035 String ts = (String) node.getProperty("TYPE", null); |
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1036 try { |
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1037 NodeTypes type = NodeTypes.valueOf(ts); |
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1038 getNodeIndex(type).remove(node); |
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1039 } catch (Exception e) { |
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1040 logger.error("deleteNode: unable to get TYPE of node: " + node); |
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1041 } |
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1042 node.delete(); |
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1043 } |
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1044 tx.success(); |
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1045 } finally { |
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1046 tx.finish(); |
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1047 } |
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1048 } |
4 | 1049 |
16 | 1050 /** |
1051 * returns the (first) Relationship of RelationTypes type from Node start. | |
1052 * | |
15 | 1053 * @param start |
1054 * @param type | |
1055 * @param direction | |
1056 * @return | |
1057 */ | |
14
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1058 protected Relationship getRelation(Node start, RelationTypes type, Direction direction) { |
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1059 Iterable<Relationship> rels; |
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1060 if (direction == null) { |
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1061 // ignore direction |
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1062 rels = start.getRelationships(type); |
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1063 } else { |
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1064 rels = start.getRelationships(type, direction); |
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1065 } |
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1066 for (Relationship rel : rels) { |
16 | 1067 // just the first one |
14
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1068 return rel; |
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1069 } |
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1070 return null; |
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1071 } |
4 | 1072 |
14
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1073 /** |
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1074 * Erzeuge eine urn aus der aktuellen Zeit in millis |
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1075 * |
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1076 * @return |
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1077 */ |
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1078 private String createRessourceURI(String prefix) { |
4 | 1079 |
14
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1080 Calendar cal = Calendar.getInstance(); |
12 | 1081 |
14
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1082 long time = cal.getTimeInMillis(); |
12 | 1083 |
14
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1084 return String.format("%s%s%s", ANNOTATION_URI_BASE, prefix, time); |
12 | 1085 |
14
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1086 } |
4 | 1087 |
32
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1088 public List<Annotation> getAnnotationsByTag(String tagUri) { |
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1089 |
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1090 ArrayList<Annotation> ret = new ArrayList<Annotation>(); |
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1091 Node tag = getTagNodeByUri(tagUri); |
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1092 |
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1093 Iterable<Relationship> rels = tag.getRelationships(Direction.INCOMING, RelationTypes.HAS_TAG); |
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1094 |
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1095 for (Relationship rel : rels) { |
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1096 Node node = rel.getStartNode(); |
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|
1097 ret.add(createAnnotationFromNode(node)); |
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1098 |
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1099 } |
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1100 return ret; |
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1101 } |
28 | 1102 |
42 | 1103 public List<Annotation> getAnnotationsByResource(String resourceUri) { |
1104 ArrayList<Annotation> ret = new ArrayList<Annotation>(); | |
1105 Node tag = getNodeFromIndex("uri", resourceUri, NodeTypes.RESOURCE); | |
1106 Iterable<Relationship> rels = tag.getRelationships(Direction.INCOMING, RelationTypes.ANNOTATES); | |
1107 for (Relationship rel : rels) { | |
43 | 1108 Node an = rel.getStartNode(); |
1109 Node rn = rel.getEndNode(); | |
1110 if (rn.getProperty("TYPE", "").equals("RESOURCE")) { | |
1111 logger.error("getAnnotationsByResource got ANNOTATES != RESOURCE"); | |
1112 } | |
1113 ret.add(createAnnotationFromNode(an)); | |
42 | 1114 } |
1115 return ret; | |
1116 } | |
1117 | |
4 | 1118 } |