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author | dwinter |
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date | Mon, 10 Oct 2011 17:52:22 +0200 |
parents | cbf34dd4d7e6 |
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<HTML> <BODY BGCOLOR="white"> <PRE> <FONT color="green">001</FONT> /*<a name="line.1"></a> <FONT color="green">002</FONT> * Licensed to the Apache Software Foundation (ASF) under one or more<a name="line.2"></a> <FONT color="green">003</FONT> * contributor license agreements. See the NOTICE file distributed with<a name="line.3"></a> <FONT color="green">004</FONT> * this work for additional information regarding copyright ownership.<a name="line.4"></a> <FONT color="green">005</FONT> * The ASF licenses this file to You under the Apache License, Version 2.0<a name="line.5"></a> <FONT color="green">006</FONT> * (the "License"); you may not use this file except in compliance with<a name="line.6"></a> <FONT color="green">007</FONT> * the License. You may obtain a copy of the License at<a name="line.7"></a> <FONT color="green">008</FONT> *<a name="line.8"></a> <FONT color="green">009</FONT> * http://www.apache.org/licenses/LICENSE-2.0<a name="line.9"></a> <FONT color="green">010</FONT> *<a name="line.10"></a> <FONT color="green">011</FONT> * Unless required by applicable law or agreed to in writing, software<a name="line.11"></a> <FONT color="green">012</FONT> * distributed under the License is distributed on an "AS IS" BASIS,<a name="line.12"></a> <FONT color="green">013</FONT> * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.<a name="line.13"></a> <FONT color="green">014</FONT> * See the License for the specific language governing permissions and<a name="line.14"></a> <FONT color="green">015</FONT> * limitations under the License.<a name="line.15"></a> <FONT color="green">016</FONT> */<a name="line.16"></a> <FONT color="green">017</FONT> package org.apache.commons.math.genetics;<a name="line.17"></a> <FONT color="green">018</FONT> <a name="line.18"></a> <FONT color="green">019</FONT> import java.util.ArrayList;<a name="line.19"></a> <FONT color="green">020</FONT> import java.util.Arrays;<a name="line.20"></a> <FONT color="green">021</FONT> import java.util.Collections;<a name="line.21"></a> <FONT color="green">022</FONT> import java.util.List;<a name="line.22"></a> <FONT color="green">023</FONT> <a name="line.23"></a> <FONT color="green">024</FONT> /**<a name="line.24"></a> <FONT color="green">025</FONT> * Chromosome represented by an immutable list of a fixed length.<a name="line.25"></a> <FONT color="green">026</FONT> *<a name="line.26"></a> <FONT color="green">027</FONT> * @param <T> type of the representation list<a name="line.27"></a> <FONT color="green">028</FONT> * @version $Revision: 811685 $ $Date: 2009-09-05 13:36:48 -0400 (Sat, 05 Sep 2009) $<a name="line.28"></a> <FONT color="green">029</FONT> * @since 2.0<a name="line.29"></a> <FONT color="green">030</FONT> */<a name="line.30"></a> <FONT color="green">031</FONT> public abstract class AbstractListChromosome<T> extends Chromosome {<a name="line.31"></a> <FONT color="green">032</FONT> <a name="line.32"></a> <FONT color="green">033</FONT> /** List representing the chromosome */<a name="line.33"></a> <FONT color="green">034</FONT> private final List<T> representation;<a name="line.34"></a> <FONT color="green">035</FONT> <a name="line.35"></a> <FONT color="green">036</FONT> /**<a name="line.36"></a> <FONT color="green">037</FONT> * Constructor.<a name="line.37"></a> <FONT color="green">038</FONT> * @param representation inner representation of the chromosome<a name="line.38"></a> <FONT color="green">039</FONT> */<a name="line.39"></a> <FONT color="green">040</FONT> public AbstractListChromosome(final List<T> representation) {<a name="line.40"></a> <FONT color="green">041</FONT> try {<a name="line.41"></a> <FONT color="green">042</FONT> checkValidity(representation);<a name="line.42"></a> <FONT color="green">043</FONT> } catch (InvalidRepresentationException e) {<a name="line.43"></a> <FONT color="green">044</FONT> throw new IllegalArgumentException(String.format("Invalid representation for %s", getClass().getSimpleName()), e);<a name="line.44"></a> <FONT color="green">045</FONT> }<a name="line.45"></a> <FONT color="green">046</FONT> this.representation = Collections.unmodifiableList(new ArrayList<T> (representation));<a name="line.46"></a> <FONT color="green">047</FONT> }<a name="line.47"></a> <FONT color="green">048</FONT> <a name="line.48"></a> <FONT color="green">049</FONT> /**<a name="line.49"></a> <FONT color="green">050</FONT> * Constructor.<a name="line.50"></a> <FONT color="green">051</FONT> * @param representation inner representation of the chromosome<a name="line.51"></a> <FONT color="green">052</FONT> */<a name="line.52"></a> <FONT color="green">053</FONT> public AbstractListChromosome(final T[] representation) {<a name="line.53"></a> <FONT color="green">054</FONT> this(Arrays.asList(representation));<a name="line.54"></a> <FONT color="green">055</FONT> }<a name="line.55"></a> <FONT color="green">056</FONT> <a name="line.56"></a> <FONT color="green">057</FONT> /**<a name="line.57"></a> <FONT color="green">058</FONT> *<a name="line.58"></a> <FONT color="green">059</FONT> * Asserts that <code>representation</code> can represent a valid chromosome.<a name="line.59"></a> <FONT color="green">060</FONT> * @param chromosomeRepresentation representation of the chromosome<a name="line.60"></a> <FONT color="green">061</FONT> * @throws InvalidRepresentationException iff the <code>representation</code> can not represent<a name="line.61"></a> <FONT color="green">062</FONT> * a valid chromosome<a name="line.62"></a> <FONT color="green">063</FONT> */<a name="line.63"></a> <FONT color="green">064</FONT> protected abstract void checkValidity(List<T> chromosomeRepresentation) throws InvalidRepresentationException;<a name="line.64"></a> <FONT color="green">065</FONT> <a name="line.65"></a> <FONT color="green">066</FONT> /**<a name="line.66"></a> <FONT color="green">067</FONT> * Returns the (immutable) inner representation of the chromosome.<a name="line.67"></a> <FONT color="green">068</FONT> * @return the representation of the chromosome<a name="line.68"></a> <FONT color="green">069</FONT> */<a name="line.69"></a> <FONT color="green">070</FONT> protected List<T> getRepresentation() {<a name="line.70"></a> <FONT color="green">071</FONT> return representation;<a name="line.71"></a> <FONT color="green">072</FONT> }<a name="line.72"></a> <FONT color="green">073</FONT> <a name="line.73"></a> <FONT color="green">074</FONT> /**<a name="line.74"></a> <FONT color="green">075</FONT> * Returns the length of the chromosome.<a name="line.75"></a> <FONT color="green">076</FONT> * @return the length of the chromosome<a name="line.76"></a> <FONT color="green">077</FONT> */<a name="line.77"></a> <FONT color="green">078</FONT> public int getLength() {<a name="line.78"></a> <FONT color="green">079</FONT> return getRepresentation().size();<a name="line.79"></a> <FONT color="green">080</FONT> }<a name="line.80"></a> <FONT color="green">081</FONT> <a name="line.81"></a> <FONT color="green">082</FONT> /**<a name="line.82"></a> <FONT color="green">083</FONT> * Creates a new instance of the same class as <code>this</code> is, with a<a name="line.83"></a> <FONT color="green">084</FONT> * given <code>arrayRepresentation</code>. This is needed in crossover and<a name="line.84"></a> <FONT color="green">085</FONT> * mutation operators, where we need a new instance of the same class, but<a name="line.85"></a> <FONT color="green">086</FONT> * with different array representation.<a name="line.86"></a> <FONT color="green">087</FONT> *<a name="line.87"></a> <FONT color="green">088</FONT> * Usually, this method just calls a constructor of the class.<a name="line.88"></a> <FONT color="green">089</FONT> *<a name="line.89"></a> <FONT color="green">090</FONT> * @param chromosomeRepresentation<a name="line.90"></a> <FONT color="green">091</FONT> * the inner array representation of the new chromosome.<a name="line.91"></a> <FONT color="green">092</FONT> * @return new instance extended from FixedLengthChromosome with the given<a name="line.92"></a> <FONT color="green">093</FONT> * arrayRepresentation<a name="line.93"></a> <FONT color="green">094</FONT> */<a name="line.94"></a> <FONT color="green">095</FONT> public abstract AbstractListChromosome<T> newFixedLengthChromosome(final List<T> chromosomeRepresentation);<a name="line.95"></a> <FONT color="green">096</FONT> <a name="line.96"></a> <FONT color="green">097</FONT> /**<a name="line.97"></a> <FONT color="green">098</FONT> * {@inheritDoc}<a name="line.98"></a> <FONT color="green">099</FONT> */<a name="line.99"></a> <FONT color="green">100</FONT> @Override<a name="line.100"></a> <FONT color="green">101</FONT> public String toString() {<a name="line.101"></a> <FONT color="green">102</FONT> return String.format("(f=%s %s)", getFitness(), getRepresentation());<a name="line.102"></a> <FONT color="green">103</FONT> }<a name="line.103"></a> <FONT color="green">104</FONT> }<a name="line.104"></a> </PRE> </BODY> </HTML>