Mercurial > hg > drupalISMI

annotate importFromOpenMind/importer/compare_models.py @ 48:6625019a0c96

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old model2neo4j renamed to model2neo4j_restclient. new model2neo4j_client and model2neo4j_import. fixed ismixml2model and compare_models.
author casties
date Tue, 07 Feb 2017 21:06:13 +0100
parents 378dcb66a27f
children
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378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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1 import networkx as nx
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2 import sys
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3 import csv
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4 from sqlalchemy.sql.expression import false
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5
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6 ## configure behaviour
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7
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8 # metworkx graph files
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9 input1_fn = 'ismi_graph1.gpickle'
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10 input2_fn = 'ismi_graph2.gpickle'
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11
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12 # name of type attribute
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13 node_type_attribute = '_type'
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14 rel_type_attribute = '_type'
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15
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16 # also compare attributes
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17 check_attributes = True
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18 check_attribute_content = False
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19
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20 # active log levels for logging
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21 logLevels = {'DEBUG', 'INFO', 'WARNING', 'ERROR', 'SYSMSG'}
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22 #logLevels = {'INFO', 'WARNING', 'ERROR', 'SYSMSG'}
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23 #logLevels = {'INFO', 'ERROR', 'SYSMSG'}
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24
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25 def log(level, message):
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26 if level in logLevels:
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27 print("%s: %s"%(level, message))
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30 def compare_attributes(attrs1, attrs2):
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31 """compare two sets of attributes"""
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32 for a in attrs1.keys():
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33 if a.startswith('_n_'):
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34 continue
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36 if a not in attrs2:
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37 log('DEBUG', "attribute %s missing in attrs2"%a)
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38 return False
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40 elif check_attribute_content:
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41 val1 = attrs1[a]
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42 val2 = attrs2[a]
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43 if isinstance(val1, str):
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44 val1 = val1.replace('\r', '')
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45 val2 = val2.replace('\r', '')
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47 if val1 != val2:
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48 log('DEBUG', "attribute %s different in attrs2: \n%s\n vs \n%s\n"%(a, repr(val1), repr(val2)))
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49 return False
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51 for a in attrs2.keys():
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52 if a.startswith('_n_'):
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53 continue
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54
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55 if a not in attrs1:
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56 log('DEBUG', "attribute %s missing in attrs1"%a)
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57 return False
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58
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59 return True
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60
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61 def compare_nodes(nx_graph1, nx_graph2):
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62 """compare nodes of two graphs"""
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63
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64 log('INFO', "Compare graph nodes: %s vs %s"%(repr(nx_graph1), repr(nx_graph2)))
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65 cnt = 0
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66 missing_nodes1 = []
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67 missing_nodes2 = []
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68 attribute_differences = []
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69 # iterate all nodes in graph 1
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70 for n in nx.nodes_iter(nx_graph1):
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71 if not nx_graph2.has_node(n):
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72 missing_nodes2.append(n)
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73
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74 else:
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75 attrs1 = nx_graph1.node[n]
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76 attrs2 = nx_graph2.node[n]
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77 if check_attributes and not compare_attributes(attrs1, attrs2):
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78 attribute_differences.append(n)
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79
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80 if len(missing_nodes2) > 0:
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81 log('WARNING', "%s nodes missing in graph 2"%len(missing_nodes2))
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82 log('DEBUG', "nodes: %s"%missing_nodes2)
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83 #log('DEBUG', "nodes: %s"%([nx_graph1.node[n] for n in missing_nodes2]))
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84
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85 # iterate all nodes in graph 2
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86 for n in nx.nodes_iter(nx_graph2):
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87 #attrs = nx_graph.node[n]
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88
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89 if not nx_graph1.has_node(n):
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90 missing_nodes1.append(n)
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91
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92 if len(missing_nodes1) > 0:
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93 log('WARNING', "%s nodes missing in graph 1"%len(missing_nodes1))
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94 log('DEBUG', "nodes: %s"%(missing_nodes1))
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95
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96 if len(attribute_differences) > 0:
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97 log('WARNING', "%s nodes with attribute differences"%len(attribute_differences))
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98 log('DEBUG', "nodes: %s"%(attribute_differences))
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99
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100
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101 def compare_relations(nx_graph1, nx_graph2):
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102 """compare relations of two graphs"""
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103
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104 log('INFO', "Compare graph relations: %s vs %s"%(repr(nx_graph1), repr(nx_graph2)))
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105 cnt = 0
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106 missing_rels1 = []
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107 missing_rels2 = []
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108 # iterate all edges in graph 1
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109 for (s, t) in nx.edges_iter(nx_graph1):
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110
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111 if not nx_graph2.has_edge(s, t):
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112 missing_rels2.append((s,t))
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113
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114 if len(missing_rels2) > 0:
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115 log('WARNING', "%s relations missing in graph 2"%len(missing_rels2))
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116 log('DEBUG', "relations: %s"%missing_rels2)
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117 #log('DEBUG', "nodes: %s"%([nx_graph1.node[n] for n in missing_nodes2]))
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118
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119 # iterate all nodes in graph 2
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120 for (s, t) in nx.edges_iter(nx_graph2):
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121 #attrs = nx_graph.node[n]
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122
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123 if not nx_graph1.has_edge(s, t):
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124 missing_rels1.append((s,t))
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125
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126 if len(missing_rels1) > 0:
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127 log('WARNING', "%s relations missing in graph 1"%len(missing_rels1))
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128 log('DEBUG', "relations: %s"%(missing_rels1))
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129
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130
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131 ## main
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132
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133 print("Modify networkx graph")
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134
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135 # read commandline parameters
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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136 if len(sys.argv) > 2:
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137 input1_fn = sys.argv[1]
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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138 input2_fn = sys.argv[2]
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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139
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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140 # read networkx graph from pickle
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141 print("Reading graph 1 from %s"%input1_fn)
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142 nx_graph1 = nx.read_gpickle(input1_fn)
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143 print("Graph 1 info: %s"%nx.info(nx_graph1))
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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144
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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145 print("Reading graph 2 from %s"%input2_fn)
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146 nx_graph2 = nx.read_gpickle(input2_fn)
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147 print("Graph 2 info: %s"%nx.info(nx_graph2))
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148
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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149 # operate
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150 compare_nodes(nx_graph1, nx_graph2)
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151 compare_relations(nx_graph1, nx_graph2)
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152
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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153
378dcb66a27f new compare_models comparing the existence of nodes and relations in two graphs.
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154 print("Done.")