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1 package de.mpiwg.itgroup.eSciDoc.Tools.Pubman;
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2
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3 // geht durch alle eintraege und tested auf personen ids
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4
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5 // gegebenefalls werden sie hinzugefuegt (dazu python tool addconeids aufrufen.
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6 import java.io.BufferedReader;
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7 import java.io.BufferedWriter;
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8 import java.io.File;
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9 import java.io.FileInputStream;
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10 import java.io.FileNotFoundException;
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11 import java.io.FileOutputStream;
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12 import java.io.FileReader;
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13 import java.io.FileWriter;
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14 import java.io.IOException;
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15 import java.io.InputStreamReader;
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16 import java.io.OutputStreamWriter;
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17 import java.io.UnsupportedEncodingException;
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18 import java.util.ArrayList;
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19 import java.util.HashMap;
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20 import java.util.List;
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21
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22 import org.apache.http.HttpEntity;
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23 import org.apache.http.HttpResponse;
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24 import org.apache.log4j.Level;
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25 import org.apache.log4j.Logger;
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26 import org.jdom.Document;
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27 import org.jdom.Element;
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28 import org.jdom.JDOMException;
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29 import org.jdom.Namespace;
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30 import org.jdom.xpath.XPath;
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31
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32
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33 import com.sun.xml.internal.xsom.impl.scd.Iterators.Map;
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34
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35 import sun.security.krb5.internal.crypto.Nonce;
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36
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37 import de.mpiwg.itgroup.eSciDoc.Tools.EScidocBasicHandler;
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38 import de.mpiwg.itgroup.eSciDoc.Tools.EScidocTools;
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39 import de.mpiwg.itgroup.eSciDoc.exceptions.ESciDocXmlObjectException;
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40 import de.mpiwg.itgroup.eSciDoc.utils.eSciDocXmlObject;
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41
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42
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43
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44
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45 public class AddConeIds {
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46
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47 /**
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48 * @param connector
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49 * @param args
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50 * @throws ESciDocXmlObjectException
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51 * @throws JDOMException
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52 * @throws IOException
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53 * @throws IllegalStateException
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54 */
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55
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56
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57 public void findPersons(eSciDocXmlObject obj,BufferedWriter out,HashMap<String,List<List<String>>>newTerms, EScidocBasicHandler connector) throws JDOMException, IOException, IllegalStateException, ESciDocXmlObjectException{
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58
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59
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60 Document doc = obj.getDocument();
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61 Boolean changed=false;
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62 XPath personXPath = EScidocTools.getESciDocXpath("//person:person");
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63 @SuppressWarnings("unchecked")
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64 List<Element> persons = personXPath.selectNodes(doc);
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65
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66 XPath familyNameXpath = EScidocTools.getESciDocXpath(".//eterms:family-name");
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67 XPath givenNameXpath = EScidocTools.getESciDocXpath(".//eterms:given-name");
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68 XPath completeNameXpath = EScidocTools.getESciDocXpath(".//eterms:complete-name");
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69
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70 XPath identifierXpath = EScidocTools.getESciDocXpath("./dc:identifier");
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71
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72
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73 for (Element person : persons) {
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74
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75 String famName="";
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76
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77 Element fam = (Element)familyNameXpath.selectSingleNode(person);
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78
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79 if (fam != null){
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80 famName = fam.getTextTrim();
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81 }
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82
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83 Element giv = (Element)givenNameXpath.selectSingleNode(person);
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84
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85 String givName ="";
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86 if (fam != null){
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87 givName = giv.getTextTrim();
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88 }
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89
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90 Element compl = (Element)completeNameXpath.selectSingleNode(person);
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91
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92 String complName="";
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93 if (fam != null){
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94 complName = compl.getTextTrim();
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95 }
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96
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97
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98 List<Element> ids = (List<Element>)identifierXpath.selectNodes(person);
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99
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100
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101 List<String>identifiers = new ArrayList<String> ();
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102 for (Element id : ids){
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103 identifiers.add(id.getTextTrim());
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104
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105 }
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106
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107 for (String identifier : identifiers){
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108 String outStr = String.format("%s,%s,%s,%s,%s\n",obj.getESciDocId(),famName,givName,complName,identifier);
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109 out.write(outStr);
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110 }
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111
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112 if (identifiers.size()==0){
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113 String outStr = String.format("%s,%s,%s,%s,%s\n",obj.getESciDocId(),famName,givName,complName,"");
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114
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115
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116 if (newTerms !=null){ // es existieren neue cone eintrage
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117 if (newTerms.containsKey(obj.getESciDocId())){ // ergŠnzung existiert
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118 for (List<String> entry : newTerms.get(obj.getESciDocId())){ //hole diese
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119 if ( entry.get(0).equals(famName) && entry.get(1).equals(givName)){
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120
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121 int size= entry.size();
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122 String coneId = entry.get(size-1);
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123
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124
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125 Element newIdent = new Element("identifier", EScidocTools.DC);
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126 Namespace ns = Namespace.getNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance");
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127 newIdent.setAttribute("type", "eterms:CONE",ns);
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128 newIdent.setText(coneId);
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129 person.addContent(newIdent);
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130
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131 //System.out.println(obj.printXML());
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132 connector.updateItem(obj);
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133 HttpResponse retValue = connector.submitAnObject(obj, "changed cone identifiers");
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134 System.out.println(EScidocBasicHandler.convertStreamToString(retValue.getEntity().getContent()));
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135 //
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136 // System.out.println(EScidocBasicHandler.convertStreamToString(retValu.getEntity().getContent()));
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137 //
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138
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139
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140 HttpResponse resObj = connector.eScidocGet(obj.getESciDocId());
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141 HttpEntity ent = resObj.getEntity();
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142 if (ent!=null){
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143 obj= new eSciDocXmlObject(ent.getContent());
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144 } else {
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145 System.out.println("Can not retrieve:" + obj.getESciDocId());
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146 continue;
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147 }
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148
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149
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150 retValue = connector.releaseAnObject(obj, "changed cone identifiers");
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151 System.out.println(EScidocBasicHandler.convertStreamToString(retValue.getEntity().getContent()));
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152 }
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153
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154 }
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155 }
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156
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157 }
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158 out.write(outStr);
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159 }
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160
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161 out.flush();
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162
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163
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164 }
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165
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166
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167 }
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168
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169
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170 public HashMap<String,List<List<String>>> readEscidocToIdentifier() throws IOException{
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171
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172 HashMap<String,List<List<String>>> newTerms = new HashMap<String, List<List<String>>>();
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173
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174 String founds = readFileAsString("/tmp/found.csv");
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175 String[] splitted = founds.split("\n");
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176 //ir/item/escidoc:647775,McLaughlin,Peter,McLaughlin, Peter,http://pubman.mpiwg-berlin.mpg.de/cone/persons/resource/240
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177 for (int i=0;i<splitted.length;i++){
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178
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179
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180
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181 String line = splitted[i];
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182
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183 String[] lineSplitted = line.split(",");
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184
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185
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186
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187
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188
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189 if (!newTerms.containsKey(lineSplitted[0])){
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190 newTerms.put(lineSplitted[0], new ArrayList<List<String>>());
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191 }
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192
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193 List<List<String>> content = newTerms.get(lineSplitted[0]);
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194
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195
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196 ArrayList<String> entry = new ArrayList<String>();
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197
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198
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199
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200 for (int j=1;j<lineSplitted.length;j++){
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201 entry.add(lineSplitted[j]);
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202 }
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203
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204 content.add(entry);
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205 }
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206
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207
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208 return newTerms;
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209
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210 }
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211
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212
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213 public void findAllPersons(String[] args) throws IllegalStateException, IOException, JDOMException, ESciDocXmlObjectException{
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214 File file = new File("/tmp/ids.csv");
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215
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216 BufferedWriter out =
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217 new BufferedWriter(new OutputStreamWriter(new FileOutputStream(file),"UTF8"));
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218
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219 Logger logger = Logger.getRootLogger();
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220 logger.setLevel(Level.DEBUG);
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221 EScidocBasicHandler connector = new EScidocBasicHandler(
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222 "escidoc.mpiwg-berlin.mpg.de", 8080, "dwinter", "SSSS");
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223
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224 if(args.length<2){
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225 System.out.println("Usage: startrecord maximumrecords");
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226 System.exit(-1);
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227 }
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228 String MAX_REC = args[1];
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229 String start = args[0];
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230 String objectXPath = "//escidocItem:item";
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231
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232 String query = "?maximumRecords=" + String.valueOf(MAX_REC)
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233 + "&startRecord=" + String.valueOf(start);
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234 String command = "/ir/context/escidoc:38279/resources/members";
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235 for (eSciDocXmlObject obj : connector.getObjectsFromFilterResult(
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236 command + query, objectXPath)) {
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237
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238 System.out.println(obj.getESciDocId());
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239 HashMap<String, List<List<String>>> newTerms = readEscidocToIdentifier();
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240 findPersons(obj,out,newTerms,connector);
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241
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242
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243
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244 // if (changed){
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245 //
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246 // Boolean retVal = connector.updateItem(obj);
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247 // System.out.println("Replaced:"+obj.getESciDocId());
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248 // HttpResponse retValu = connector.submitAnObject(obj, "changed cone identifiers");
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249 //
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250 // System.out.println(EScidocBasicHandler.convertStreamToString(retValu.getEntity().getContent()));
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251 // HttpResponse resObj = connector.eScidocGet(obj.getESciDocId());
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252 // HttpEntity ent = resObj.getEntity();
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253 // if (ent!=null){
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254 // obj= new eSciDocXmlObject(ent.getContent());
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255 // } else {
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256 // System.out.println("Can not retrieve:" + obj.getESciDocId());
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257 // continue;
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258 // }
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259 //
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260 // HttpResponse reValue2 = connector.releaseAnObject(obj, "changed cone identifiers");
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261 // System.out.println(EScidocBasicHandler.convertStreamToString(reValue2.getEntity().getContent()));
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262 //
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263 //
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264 // }
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265 }
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266 out.close();
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267 }
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268
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269
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270 private String readFileAsString(String filePath) throws IOException {
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271 StringBuffer fileData = new StringBuffer();
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272 BufferedReader reader = new BufferedReader(
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273 new InputStreamReader(
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274 new FileInputStream(filePath), "UTF8"));
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275 char[] buf = new char[1024];
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276 int numRead=0;
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277 while((numRead=reader.read(buf)) != -1){
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278 String readData = String.valueOf(buf, 0, numRead);
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279 fileData.append(readData);
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280 }
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281 reader.close();
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282 return fileData.toString();
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283 }
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284
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285 public static void main(String[] args) throws IllegalStateException,
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286 IOException, JDOMException, ESciDocXmlObjectException {
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287
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288
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289 AddConeIds adders = new AddConeIds();
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290
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291 adders.findAllPersons(args);
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292
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293 }
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294
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295 }
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