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1 package de.mpiwg.anteater.events.processors;
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2
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3 import java.util.ArrayList;
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4 import java.util.List;
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5 import java.util.regex.Matcher;
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6 import java.util.regex.Pattern;
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7
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8 import de.mpiwg.anteater.events.Applicant;
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9 import de.mpiwg.anteater.events.ResearchEvent;
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10 import de.mpiwg.anteater.ml.PlaceClasses;
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11 import de.mpiwg.anteater.results.ApplicantResult;
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12 import de.mpiwg.anteater.results.LocationResult;
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13 import de.mpiwg.anteater.results.ResultsCarrier;
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14 import de.mpiwg.anteater.results.SpeciesScientificResult;
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15 import de.mpiwg.anteater.text.Paragraph;
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16 import de.mpiwg.anteater.text.TextInformation;
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17 import de.mpiwg.anteater.text.TextPart;
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18
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19 public class PermitOrApplicantEventProcessor extends AEventProcessor {
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20
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21 private String applicationNrPattern = "No. ([A-Z0-9\\-]{2,})";
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22
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23 @Override
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24 public void processEvents(List<ResearchEvent> events, ResultsCarrier carrier) {
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25 TextInformation info = carrier.getTextInfo();
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26
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27 // find how many distinct applicants there are
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28 List<ApplicantResult> distinctApplicants = getDistinctApplicants(carrier);
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29
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30 if (distinctApplicants.size() == 1) {
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31 return;
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32 }
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33
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34 // if there are several applicants start new event with each applicant
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35 List<ApplicantResult> appsInSummary = new ArrayList<ApplicantResult>();
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36 List<ApplicantResult> appsInSuppleInf = new ArrayList<ApplicantResult>();
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37
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38 sortByTextType(distinctApplicants, appsInSummary, appsInSuppleInf);
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39
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40 if (appsInSummary.isEmpty()) {
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41 return;
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42 }
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43
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44 List<ResearchEvent> newEvents = new ArrayList<ResearchEvent>();
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45
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46 List<SpeciesScientificResult> speciesInSummary = new ArrayList<SpeciesScientificResult>();
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47 List<SpeciesScientificResult> speciesInSuppleInf = new ArrayList<SpeciesScientificResult>();
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48 sortSpeciesByTextType(carrier.getSpeciesResults(), speciesInSummary, speciesInSuppleInf);
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49
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50 List<LocationResult> locationsInSummary = new ArrayList<LocationResult>();
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51 List<LocationResult> locationsInSuppleInf = new ArrayList<LocationResult>();
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52 sortLocsByTextType(carrier.getLocationResults(), locationsInSummary, locationsInSuppleInf);
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53
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54
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55 ResearchEvent event = null;
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56 for (ApplicantResult appResult : appsInSummary) {
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57 TextPart text = info.getSummaries().get(
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58 appResult.getResult().getTextIdx());
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59
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60 int startSearchForNumberAt = appResult.getFinding().getStart()
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61 + appResult.getFinding().getLength();
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62
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63 int endSearchForNumber = text.getText().length();
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64 if (appsInSummary.indexOf(appResult) < appsInSummary.size() - 1)
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65 endSearchForNumber = appsInSummary
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66 .get(appsInSummary.indexOf(appResult) + 1).getFinding()
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67 .getStart();
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68
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69 String textAsString = text.getText();
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70 String textAfterApplicant = textAsString.substring(
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71 startSearchForNumberAt, endSearchForNumber);
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72
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73 // check if there is an application number
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74 Pattern pattern = Pattern.compile(applicationNrPattern);
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75 Matcher matcher = pattern.matcher(textAfterApplicant);
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76
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77 List<LocationResult> locationsForApp = new ArrayList<LocationResult>();
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78 // find all locations between current applicant and next one
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79 for (LocationResult locationResult : locationsInSummary) {
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80 if (locationResult.getFinding().getStart() >= startSearchForNumberAt
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81 && locationResult.getFinding().getStart() < endSearchForNumber)
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82 locationsForApp.add(locationResult);
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83 }
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84
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85 List<SpeciesScientificResult> speciesForApp = new ArrayList<SpeciesScientificResult>();
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86 // find all species between current applicant and next one
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87 for (SpeciesScientificResult speciesResult : speciesInSummary) {
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88 if (speciesResult.getFinding().getStart() > startSearchForNumberAt
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89 && speciesResult.getFinding().getStart() < endSearchForNumber)
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90 speciesForApp.add(speciesResult);
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91 }
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92
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93 if (event != null) {
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94 List<Applicant> applicantsInEvent = event.getApplicants();
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95 List<Applicant> applicantsWithoutLoc = new ArrayList<Applicant>();
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96
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97 Applicant newApplicant = createApplicant(appResult);
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98 event.getApplicants().add(newApplicant);
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99
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100 for (Applicant applicantInEvent : applicantsInEvent)
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101 if (applicantInEvent.getApplicantInstitution().isEmpty()
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102 && applicantInEvent.getLocation().isEmpty())
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103 applicantsWithoutLoc.add(applicantInEvent);
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104
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105 setLocations(applicantsWithoutLoc, locationsForApp, event);
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106 setSpecies(speciesForApp, event);
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107 }
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108
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109 if (event == null)
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110 event = createEvent(appResult, info, locationsForApp,
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111 speciesForApp);
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112
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113 if (matcher.find()) {
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114 event.setApplicationOrPermitNo(matcher.group(1));
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115 newEvents.add(event);
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116 event = null;
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117 }
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118 }
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119
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120 ResearchEvent eventForPara = null;
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121 for (TextPart text : info.getSupplInfos()) {
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122 for (Paragraph para : text.getParagraphs()) {
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123 int startOfPara = text.getPositionInTextFromParagraph(para, 0);
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124 int endOfPara = startOfPara + para.getParagraphText().length();
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125
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126 Pattern pattern = Pattern.compile(applicationNrPattern);
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127 Matcher matcher = pattern.matcher(para.getParagraphText());
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128
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129 IfStatement: if (matcher.find()) {
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130 String numberInPara = matcher.group(1);
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131 for (ResearchEvent ev : newEvents) {
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132 if (numberInPara.equals(ev.getApplicationOrPermitNo()))
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133 {
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134 eventForPara = ev;
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135 break IfStatement;
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136 }
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137 }
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138 eventForPara = null;
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139 continue;
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140 }
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141
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142 if (eventForPara == null)
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143 continue;
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144
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145 for (LocationResult loc : locationsInSuppleInf) {
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146 if (info.getSupplInfos().indexOf(text) != loc.getResult().getTextIdx()) {
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147 continue;
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148 }
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149
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150 if (loc.getFinding().getStart() >= startOfPara && loc.getFinding().getStart() < endOfPara) {
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151 if (loc.getPrediction() == PlaceClasses.RESEARCH_LOCATION)
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152 eventForPara.getResearchLocations().add(createLocation(loc));
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153 }
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154 }
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155
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156 for (SpeciesScientificResult spec : speciesInSuppleInf) {
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157 if (info.getSupplInfos().indexOf(text) != spec.getResult().getTextIdx()) {
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158 continue;
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159 }
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160
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161 if (spec.getFinding().getStart() >= startOfPara && spec.getFinding().getStart() < endOfPara) {
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162 eventForPara.getResearchedSpecies().add(createSpecies(spec));
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163 }
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164 }
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165 }
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166 }
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167
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168 events.addAll(newEvents);
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169 }
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170
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171 @Override
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172 public int getRank() {
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173 return 10;
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174 }
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175
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176 }
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