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1 package de.mpiwg.anteater.results.filter;
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2
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3 import java.util.ArrayList;
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4 import java.util.List;
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5
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6 import de.mpiwg.anteater.results.ApplicantResult;
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7 import de.mpiwg.anteater.results.LocationResult;
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8 import de.mpiwg.anteater.results.SpeciesScientificResult;
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9 import de.mpiwg.anteater.text.Paragraph;
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10 import de.mpiwg.anteater.text.TextInformation;
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11 import de.mpiwg.anteater.text.TextPart;
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12 import de.mpiwg.anteater.text.TextType;
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13
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14 public class SpeciesInBetweenRegexApplicantFilter implements IResultFilter {
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15
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16 @Override
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17 public void filterElements(TextInformation info,
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18 List<ApplicantResult> applicantResults,
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19 List<SpeciesScientificResult> speciesResults,
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20 List<LocationResult> locationResults) {
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21
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22 List<TextPart> summaries = info.getSummaries();
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23 List<TextPart> suppleInfs = info.getSupplInfos();
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24 for (ApplicantResult applicant : applicantResults) {
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25
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26 // if applicant was found with regex there can't be a species in it
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27 if (applicant.getPrediction() == 2.0) {
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28 TextPart part;
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29
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30 if (applicant.getResult().getType() == TextType.TYPE_SUMMARY)
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31 part = summaries.get(applicant.getResult().getTextIdx());
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32 else
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33 part = suppleInfs.get(applicant.getResult().getTextIdx());
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34
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35 Paragraph paragraph = part.getParagraphOfIndex(applicant.getFinding().getStart());
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36
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37 List<SpeciesScientificResult> toBeRemoved = new ArrayList<SpeciesScientificResult>();
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38 for (SpeciesScientificResult species : speciesResults) {
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39 // if species is from same text type and text index
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40 if (species.getResult().getType() == applicant.getResult().getType() && species.getResult().getTextIdx() == applicant.getResult().getTextIdx()) {
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41 // if species is not in same paragraph as applicant all is good
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42 if (part.getParagraphOfIndex(species.getFinding().getStart()) != paragraph)
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43 continue;
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44 }
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45 toBeRemoved.add(species);
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46 }
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47
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48 speciesResults.removeAll(toBeRemoved);
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49 }
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50 }
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51 }
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52
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53 }
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