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1 package de.mpiwg.anteater.xml.impl;
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2
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3 import java.io.InputStream;
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4 import java.util.ArrayList;
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5 import java.util.List;
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6
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7 import org.jdom2.Attribute;
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8 import org.jdom2.DataConversionException;
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9 import org.jdom2.Element;
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10 import org.jdom2.Namespace;
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11
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12 import de.mpiwg.anteater.species.scientific.ScientificName;
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13 import de.mpiwg.anteater.xml.INameFinderParser;
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14
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15 public class GNRDXMLParser extends JDOMParser implements INameFinderParser {
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16
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17 public GNRDXMLParser(String content) {
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18 super(content, false);
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19 }
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20
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21 public GNRDXMLParser(InputStream stream) {
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22 super(stream);
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23 }
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24
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25
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26 /* (non-Javadoc)
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27 * @see de.mpiwg.anteater.xml.impl.INameFinderParser#getStatus()
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28 */
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29 @Override
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30 public String getStatus() {
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31 List<Element> results = executeXPath("//status", null);
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32 if (results.size() > 0) {
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33 Element statusNode = results.get(0);
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34 return stripText(statusNode);
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35 }
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36 return null;
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37 }
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38
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39 /* (non-Javadoc)
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40 * @see de.mpiwg.anteater.xml.impl.INameFinderParser#getTokenURL()
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41 */
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42 @Override
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43 public String getTokenURL() {
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44 List<Element> results = executeXPath("//token_url", null);
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45 if (results.size() > 0) {
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46 Element statusNode = results.get(0);
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47 return stripText(statusNode);
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48 }
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49 return null;
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50 }
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51
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52 @Override
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53 public List<ScientificName> parseScientificNames() {
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54 List<Element> names = executeXPath("/result/names/name", null);
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55
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56 List<ScientificName> scientificNames = new ArrayList<ScientificName>();
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57 for (Element name : names) {
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58 ScientificName scienName = new ScientificName();
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59
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60 Element verbNode = name.getChild("verbatim");
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61 scienName.setReferenceInText(verbNode.getText());
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62
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63 Element identNode = name.getChild("identifiedName");
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64 if (identNode != null)
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65 scienName.setIdentifiedName(identNode.getText());
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66
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67 Element scientNode = name.getChild("scientificName", Namespace.getNamespace("http://rs.tdwg.org/dwc/terms/"));
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68 if (scientNode != null)
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69 scienName.setScientificName(scientNode.getText());
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70
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71 Element offsetNode = name.getChild("offset");
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72 if (offsetNode != null) {
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73 Attribute startAttr = offsetNode.getAttribute("start");
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74 int start = -1;
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75 if (startAttr != null) {
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76 try {
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77 start = startAttr.getIntValue();
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78 } catch (DataConversionException e) {
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79 // TODO Auto-generated catch block
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80 e.printStackTrace();
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81 }
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82 }
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83 if (start > -1) {
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84 scienName.setStart(start);
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85
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86 Attribute endAttr = offsetNode.getAttribute("end");
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87 if (endAttr != null) {
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88 try {
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89 scienName.setLength(endAttr.getIntValue() - start + 1);
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90 } catch (DataConversionException e) {
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91 // TODO Auto-generated catch block
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92 e.printStackTrace();
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93 }
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94 }
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95 }
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96 }
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97
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98 scientificNames.add(scienName);
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99 }
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100
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101 return scientificNames;
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102 }
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103 }
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